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Cluster: Rep_3006_CGC35

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3006_c_36 Rep_3006_c_36_4 2856 3719 + 3.A.1.1.10
TC Rep_3006_c_36 Rep_3006_c_36_5 3739 4620 + 3.A.1.1.29
STP Rep_3006_c_36 Rep_3006_c_36_6 4675 6159 + SBP_bac_1
pfam Rep_3006_c_36 Rep_3006_c_36_7 6286 9198 + DUF6259
CAZyme Rep_3006_c_36 Rep_3006_c_36_8 9264 11054 + GH163
pfam Rep_3006_c_36 Rep_3006_c_36_9 11069 12022 + BcrAD_BadFG
STP Rep_3006_c_36 Rep_3006_c_36_10 12024 12953 + SIS
CAZyme Rep_3006_c_36 Rep_3006_c_36_11 13025 14386 + GH29
Gene ID: Rep_3006_c_36_4
Type: TC
Location: 2856 - 3719 (+)
Gene ID: Rep_3006_c_36_5
Type: TC
Location: 3739 - 4620 (+)
Gene ID: Rep_3006_c_36_6
Type: STP
Location: 4675 - 6159 (+)
Gene ID: Rep_3006_c_36_7
Type: pfam
Location: 6286 - 9198 (+)
Gene ID: Rep_3006_c_36_8
Type: CAZyme
Location: 9264 - 11054 (+)
Gene ID: Rep_3006_c_36_9
Type: pfam
Location: 11069 - 12022 (+)
Gene ID: Rep_3006_c_36_10
Type: STP
Location: 12024 - 12953 (+)
Gene ID: Rep_3006_c_36_11
Type: CAZyme
Location: 13025 - 14386 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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