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Cluster: Rep_3006_CGC21

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3006_c_16 Rep_3006_c_16_29 36433 37497 + 2.A.20.1.5
pfam Rep_3006_c_16 Rep_3006_c_16_30 37510 38145 + PhoU_div
TC Rep_3006_c_16 Rep_3006_c_16_31 38305 38886 - 3.A.1.16.2
pfam Rep_3006_c_16 Rep_3006_c_16_32 38879 39643 - BPD_transp_1
STP Rep_3006_c_16 Rep_3006_c_16_33 39618 40580 - LysR_substrate
CAZyme Rep_3006_c_16 Rep_3006_c_16_34 40717 42804 - GH3
pfam Rep_3006_c_16 Rep_3006_c_16_35 43023 43706 + ThiF
CAZyme Rep_3006_c_16 Rep_3006_c_16_36 43821 46049 + GT35
CAZyme Rep_3006_c_16 Rep_3006_c_16_37 46079 47545 + GH77
pfam Rep_3006_c_16 Rep_3006_c_16_38 47605 48597 - URO-D
TC Rep_3006_c_16 Rep_3006_c_16_39 48826 51396 - 3.A.3.2.21
Gene ID: Rep_3006_c_16_29
Type: TC
Location: 36433 - 37497 (+)
Gene ID: Rep_3006_c_16_30
Type: pfam
Location: 37510 - 38145 (+)
Gene ID: Rep_3006_c_16_31
Type: TC
Location: 38305 - 38886 (-)
Gene ID: Rep_3006_c_16_32
Type: pfam
Location: 38879 - 39643 (-)
Gene ID: Rep_3006_c_16_33
Type: STP
Location: 39618 - 40580 (-)
Gene ID: Rep_3006_c_16_34
Type: CAZyme
Location: 40717 - 42804 (-)
Gene ID: Rep_3006_c_16_35
Type: pfam
Location: 43023 - 43706 (+)
Gene ID: Rep_3006_c_16_36
Type: CAZyme
Location: 43821 - 46049 (+)
Gene ID: Rep_3006_c_16_37
Type: CAZyme
Location: 46079 - 47545 (+)
Gene ID: Rep_3006_c_16_38
Type: pfam
Location: 47605 - 48597 (-)
Gene ID: Rep_3006_c_16_39
Type: TC
Location: 48826 - 51396 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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