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Cluster: Rep_3006_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_3006_c_15 Rep_3006_c_15_25 25686 26660 - GH29
TF Rep_3006_c_15 Rep_3006_c_15_26 26798 27559 + HTH_AraC
pfam Rep_3006_c_15 Rep_3006_c_15_27 27577 29739 + S1 | Tex_N | HHH_3 | Tex_YqgF | HHH_9 | Tex_central_region | S1_RRP5
TC Rep_3006_c_15 Rep_3006_c_15_28 30265 32055 + 3.A.1.111.2
CAZyme Rep_3006_c_15 Rep_3006_c_15_29 32328 35390 + GH38
TC Rep_3006_c_15 Rep_3006_c_15_30 35504 36361 - 3.A.1.1.27
TC Rep_3006_c_15 Rep_3006_c_15_31 36358 37752 - 3.A.1.1.27
STP Rep_3006_c_15 Rep_3006_c_15_32 37968 39149 - SBP_bac_1
TF Rep_3006_c_15 Rep_3006_c_15_33 39182 40237 - LacI
TC Rep_3006_c_15 Rep_3006_c_15_34 40510 41361 + 2.A.115.1.2
pfam Rep_3006_c_15 Rep_3006_c_15_35 41794 42714 + DHDPS
TC Rep_3006_c_15 Rep_3006_c_15_36 42730 43674 + 3.A.1.1.10
TC Rep_3006_c_15 Rep_3006_c_15_37 43687 44589 + 3.A.1.1.29
TC Rep_3006_c_15 Rep_3006_c_15_38 44641 46152 + 3.A.1.1.29
CAZyme Rep_3006_c_15 Rep_3006_c_15_39 46283 48106 + GH143
Gene ID: Rep_3006_c_15_25
Type: CAZyme
Location: 25686 - 26660 (-)
Gene ID: Rep_3006_c_15_26
Type: TF
Location: 26798 - 27559 (+)
Gene ID: Rep_3006_c_15_27
Type: pfam
Location: 27577 - 29739 (+)
Gene ID: Rep_3006_c_15_28
Type: TC
Location: 30265 - 32055 (+)
Gene ID: Rep_3006_c_15_29
Type: CAZyme
Location: 32328 - 35390 (+)
Gene ID: Rep_3006_c_15_30
Type: TC
Location: 35504 - 36361 (-)
Gene ID: Rep_3006_c_15_31
Type: TC
Location: 36358 - 37752 (-)
Gene ID: Rep_3006_c_15_32
Type: STP
Location: 37968 - 39149 (-)
Gene ID: Rep_3006_c_15_33
Type: TF
Location: 39182 - 40237 (-)
Gene ID: Rep_3006_c_15_34
Type: TC
Location: 40510 - 41361 (+)
Gene ID: Rep_3006_c_15_35
Type: pfam
Location: 41794 - 42714 (+)
Gene ID: Rep_3006_c_15_36
Type: TC
Location: 42730 - 43674 (+)
Gene ID: Rep_3006_c_15_37
Type: TC
Location: 43687 - 44589 (+)
Gene ID: Rep_3006_c_15_38
Type: TC
Location: 44641 - 46152 (+)
Gene ID: Rep_3006_c_15_39
Type: CAZyme
Location: 46283 - 48106 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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