dbCAN Logo

Cluster: Rep_3006_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3006_c_12 Rep_3006_c_12_21 24406 25488 - 9.A.23.1.1
CAZyme Rep_3006_c_12 Rep_3006_c_12_22 26152 27711 - GH142
CAZyme Rep_3006_c_12 Rep_3006_c_12_23 27708 28622 - GH32
TF Rep_3006_c_12 Rep_3006_c_12_24 28847 31036 + HTH_AraC
TC Rep_3006_c_12 Rep_3006_c_12_25 31182 32744 + 3.A.1.1.10
TC Rep_3006_c_12 Rep_3006_c_12_26 32750 33694 + 3.A.1.1.10
TC Rep_3006_c_12 Rep_3006_c_12_27 33709 34590 + 3.A.1.1.10
Gene ID: Rep_3006_c_12_21
Type: TC
Location: 24406 - 25488 (-)
Gene ID: Rep_3006_c_12_22
Type: CAZyme
Location: 26152 - 27711 (-)
Gene ID: Rep_3006_c_12_23
Type: CAZyme
Location: 27708 - 28622 (-)
Gene ID: Rep_3006_c_12_24
Type: TF
Location: 28847 - 31036 (+)
Gene ID: Rep_3006_c_12_25
Type: TC
Location: 31182 - 32744 (+)
Gene ID: Rep_3006_c_12_26
Type: TC
Location: 32750 - 33694 (+)
Gene ID: Rep_3006_c_12_27
Type: TC
Location: 33709 - 34590 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List