dbCAN Logo

Cluster: Rep_3006_CGC15

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_3006_c_9 Rep_3006_c_9_33 39376 40479 + GH179
TC Rep_3006_c_9 Rep_3006_c_9_34 40826 42280 + 3.B.1.1.2
pfam Rep_3006_c_9 Rep_3006_c_9_35 42293 42628 + OAD_gamma
TC Rep_3006_c_9 Rep_3006_c_9_36 42651 43082 + 3.B.1.1.2
TC Rep_3006_c_9 Rep_3006_c_9_37 43117 44622 + 3.B.1.1.3
TC Rep_3006_c_9 Rep_3006_c_9_38 44646 46043 + 3.B.1.1.6
NULL(UNKNOWN) Rep_3006_c_9 Rep_3006_c_9_39 46106 47683 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_3006_c_9 Rep_3006_c_9_40 47676 48386 - 3.A.1.147.2
NULL(UNKNOWN) Rep_3006_c_9 Rep_3006_c_9_41 48398 48817 - NULL(UNKNOWN)
[View Structural Homologs]
TF Rep_3006_c_9 Rep_3006_c_9_42 48814 49017 - HTH_3
CAZyme Rep_3006_c_9 Rep_3006_c_9_43 49329 50390 + GH179
Gene ID: Rep_3006_c_9_33
Type: CAZyme
Location: 39376 - 40479 (+)
Gene ID: Rep_3006_c_9_34
Type: TC
Location: 40826 - 42280 (+)
Gene ID: Rep_3006_c_9_35
Type: pfam
Location: 42293 - 42628 (+)
Gene ID: Rep_3006_c_9_36
Type: TC
Location: 42651 - 43082 (+)
Gene ID: Rep_3006_c_9_37
Type: TC
Location: 43117 - 44622 (+)
Gene ID: Rep_3006_c_9_38
Type: TC
Location: 44646 - 46043 (+)
Gene ID: Rep_3006_c_9_39
Type:
Location: 46106 - 47683 (-)
Gene ID: Rep_3006_c_9_40
Type: TC
Location: 47676 - 48386 (-)
Gene ID: Rep_3006_c_9_41
Type:
Location: 48398 - 48817 (-)
Gene ID: Rep_3006_c_9_42
Type: TF
Location: 48814 - 49017 (-)
Gene ID: Rep_3006_c_9_43
Type: CAZyme
Location: 49329 - 50390 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_3006_c_9_38 vegetarian > vegan 1.35390 0.00364

🧭 Explore Read Mapping of CGC

← Back to Cluster List