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Cluster: Rep_3006_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_3006_c_8 Rep_3006_c_8_28 30940 32613 - GH146
TF Rep_3006_c_8 Rep_3006_c_8_29 32710 33711 - LacI
CAZyme Rep_3006_c_8 Rep_3006_c_8_30 33813 35318 - GH28
TC Rep_3006_c_8 Rep_3006_c_8_31 35411 37189 - 3.A.1.1.10
TC Rep_3006_c_8 Rep_3006_c_8_32 37276 38196 - 3.A.1.1.10
TC Rep_3006_c_8 Rep_3006_c_8_33 38215 39153 - 3.A.1.1.10
CAZyme Rep_3006_c_8 Rep_3006_c_8_34 39196 40686 - GH28
CAZyme Rep_3006_c_8 Rep_3006_c_8_35 40697 42187 - GH28
Gene ID: Rep_3006_c_8_28
Type: CAZyme
Location: 30940 - 32613 (-)
Gene ID: Rep_3006_c_8_29
Type: TF
Location: 32710 - 33711 (-)
Gene ID: Rep_3006_c_8_30
Type: CAZyme
Location: 33813 - 35318 (-)
Gene ID: Rep_3006_c_8_31
Type: TC
Location: 35411 - 37189 (-)
Gene ID: Rep_3006_c_8_32
Type: TC
Location: 37276 - 38196 (-)
Gene ID: Rep_3006_c_8_33
Type: TC
Location: 38215 - 39153 (-)
Gene ID: Rep_3006_c_8_34
Type: CAZyme
Location: 39196 - 40686 (-)
Gene ID: Rep_3006_c_8_35
Type: CAZyme
Location: 40697 - 42187 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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