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Cluster: Rep_3005_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3005_c_4 Rep_3005_c_4_1 360 1991 - 3.A.1.121.5
TC Rep_3005_c_4 Rep_3005_c_4_2 2391 4487 + 3.A.10.1.5
TC Rep_3005_c_4 Rep_3005_c_4_3 4700 6076 + 9.A.40.2.1
CAZyme Rep_3005_c_4 Rep_3005_c_4_4 6218 8176 + GH151
TF Rep_3005_c_4 Rep_3005_c_4_5 8325 8723 + Pencillinase_R
peptidase Rep_3005_c_4 Rep_3005_c_4_6 8698 9663 + M56.UPW
TC Rep_3005_c_4 Rep_3005_c_4_7 9714 10592 + 3.A.1.148.3
Gene ID: Rep_3005_c_4_1
Type: TC
Location: 360 - 1991 (-)
Gene ID: Rep_3005_c_4_2
Type: TC
Location: 2391 - 4487 (+)
Gene ID: Rep_3005_c_4_3
Type: TC
Location: 4700 - 6076 (+)
Gene ID: Rep_3005_c_4_4
Type: CAZyme
Location: 6218 - 8176 (+)
Gene ID: Rep_3005_c_4_5
Type: TF
Location: 8325 - 8723 (+)
Gene ID: Rep_3005_c_4_6
Type: peptidase
Location: 8698 - 9663 (+)
Gene ID: Rep_3005_c_4_7
Type: TC
Location: 9714 - 10592 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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