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Cluster: Rep_3005_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3005_c_2 Rep_3005_c_2_22 28335 29279 + 3.A.1.1.10
TC Rep_3005_c_2 Rep_3005_c_2_23 29297 30190 + 3.A.1.1.10
STP Rep_3005_c_2 Rep_3005_c_2_24 30283 31764 + SBP_bac_1
CAZyme Rep_3005_c_2 Rep_3005_c_2_25 31858 32943 + GH179
pfam Rep_3005_c_2 Rep_3005_c_2_26 32983 34023 + GFO_IDH_MocA | GFO_IDH_MocA_C | GFO_IDH_MocA_C3
CAZyme Rep_3005_c_2 Rep_3005_c_2_27 34100 37123 - GH106
pfam Rep_3005_c_2 Rep_3005_c_2_28 37145 37969 - GDPD | DUF4996
TF Rep_3005_c_2 Rep_3005_c_2_29 37959 40226 - HTH_AraC
TC Rep_3005_c_2 Rep_3005_c_2_30 40427 42028 - 3.A.1.1.10
TC Rep_3005_c_2 Rep_3005_c_2_31 42142 43059 - 3.A.1.1.10
TC Rep_3005_c_2 Rep_3005_c_2_32 43070 44020 - 3.A.1.1.10
pfam Rep_3005_c_2 Rep_3005_c_2_33 44330 45280 - F_bP_aldolase
pfam Rep_3005_c_2 Rep_3005_c_2_34 45410 45694 - DUF6171
CAZyme Rep_3005_c_2 Rep_3005_c_2_35 45696 47183 - GH51_1
pfam Rep_3005_c_2 Rep_3005_c_2_36 47209 48429 - IMS | IMS_C
pfam Rep_3005_c_2 Rep_3005_c_2_37 48700 49236 - Ferritin | Rubrerythrin | RUBY_RBDX
TC Rep_3005_c_2 Rep_3005_c_2_38 49799 52429 - 3.A.9.1.2
STP Rep_3005_c_2 Rep_3005_c_2_39 52674 52883 + Fer4 | Fer4
pfam Rep_3005_c_2 Rep_3005_c_2_40 52880 53455 + Fer4_5 | Fer4_5
CAZyme Rep_3005_c_2 Rep_3005_c_2_41 53591 55918 - GH3
CAZyme Rep_3005_c_2 Rep_3005_c_2_42 55928 58468 - CBM67 | GH78
TC Rep_3005_c_2 Rep_3005_c_2_43 58468 59919 - 2.A.2.3.2
TF Rep_3005_c_2 Rep_3005_c_2_44 60068 61270 + HTH_AraC | HTH_AraC
pfam Rep_3005_c_2 Rep_3005_c_2_45 61420 63009 + PucR | HTH_30
TC Rep_3005_c_2 Rep_3005_c_2_46 63169 64470 + 2.A.39.1.1
pfam Rep_3005_c_2 Rep_3005_c_2_47 64481 65581 + S-Me-THD_N | S-Me-THD_C
pfam Rep_3005_c_2 Rep_3005_c_2_48 65574 67124 + ROK | Hydantoinase_A | Hydant_A_N
TC Rep_3005_c_2 Rep_3005_c_2_49 67372 68766 + 2.A.66.1.32
Gene ID: Rep_3005_c_2_22
Type: TC
Location: 28335 - 29279 (+)
Gene ID: Rep_3005_c_2_23
Type: TC
Location: 29297 - 30190 (+)
Gene ID: Rep_3005_c_2_24
Type: STP
Location: 30283 - 31764 (+)
Gene ID: Rep_3005_c_2_25
Type: CAZyme
Location: 31858 - 32943 (+)
Gene ID: Rep_3005_c_2_26
Type: pfam
Location: 32983 - 34023 (+)
Gene ID: Rep_3005_c_2_27
Type: CAZyme
Location: 34100 - 37123 (-)
Gene ID: Rep_3005_c_2_28
Type: pfam
Location: 37145 - 37969 (-)
Gene ID: Rep_3005_c_2_29
Type: TF
Location: 37959 - 40226 (-)
Gene ID: Rep_3005_c_2_30
Type: TC
Location: 40427 - 42028 (-)
Gene ID: Rep_3005_c_2_31
Type: TC
Location: 42142 - 43059 (-)
Gene ID: Rep_3005_c_2_32
Type: TC
Location: 43070 - 44020 (-)
Gene ID: Rep_3005_c_2_33
Type: pfam
Location: 44330 - 45280 (-)
Gene ID: Rep_3005_c_2_34
Type: pfam
Location: 45410 - 45694 (-)
Gene ID: Rep_3005_c_2_35
Type: CAZyme
Location: 45696 - 47183 (-)
Gene ID: Rep_3005_c_2_36
Type: pfam
Location: 47209 - 48429 (-)
Gene ID: Rep_3005_c_2_37
Type: pfam
Location: 48700 - 49236 (-)
Gene ID: Rep_3005_c_2_38
Type: TC
Location: 49799 - 52429 (-)
Gene ID: Rep_3005_c_2_39
Type: STP
Location: 52674 - 52883 (+)
Gene ID: Rep_3005_c_2_40
Type: pfam
Location: 52880 - 53455 (+)
Gene ID: Rep_3005_c_2_41
Type: CAZyme
Location: 53591 - 55918 (-)
Gene ID: Rep_3005_c_2_42
Type: CAZyme
Location: 55928 - 58468 (-)
Gene ID: Rep_3005_c_2_43
Type: TC
Location: 58468 - 59919 (-)
Gene ID: Rep_3005_c_2_44
Type: TF
Location: 60068 - 61270 (+)
Gene ID: Rep_3005_c_2_45
Type: pfam
Location: 61420 - 63009 (+)
Gene ID: Rep_3005_c_2_46
Type: TC
Location: 63169 - 64470 (+)
Gene ID: Rep_3005_c_2_47
Type: pfam
Location: 64481 - 65581 (+)
Gene ID: Rep_3005_c_2_48
Type: pfam
Location: 65574 - 67124 (+)
Gene ID: Rep_3005_c_2_49
Type: TC
Location: 67372 - 68766 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_3005_c_2_46 vegetarian > vegan 1.12503 0.01867

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