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Cluster: Rep_3005_CGC33

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3005_c_32 Rep_3005_c_32_13 16185 17144 + 3.A.1.1.10
TC Rep_3005_c_32 Rep_3005_c_32_14 17160 18068 + 3.A.1.1.29
pfam Rep_3005_c_32 Rep_3005_c_32_15 18102 18875 + AP_endonuc_2
CAZyme Rep_3005_c_32 Rep_3005_c_32_16 18973 22047 - GH106
STP Rep_3005_c_32 Rep_3005_c_32_17 22130 23728 - SBP_bac_1
TC Rep_3005_c_32 Rep_3005_c_32_18 23808 24713 - 3.A.1.1.10
TC Rep_3005_c_32 Rep_3005_c_32_19 24728 25657 - 3.A.1.1.10
TF Rep_3005_c_32 Rep_3005_c_32_20 25822 28104 - HTH_AraC | HTH_AraC
NULL(UNKNOWN) Rep_3005_c_32 Rep_3005_c_32_21 28431 29555 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_3005_c_32 Rep_3005_c_32_22 29719 30771 + GH179
TC Rep_3005_c_32 Rep_3005_c_32_23 31141 32595 + 3.B.1.1.2
Gene ID: Rep_3005_c_32_13
Type: TC
Location: 16185 - 17144 (+)
Gene ID: Rep_3005_c_32_14
Type: TC
Location: 17160 - 18068 (+)
Gene ID: Rep_3005_c_32_15
Type: pfam
Location: 18102 - 18875 (+)
Gene ID: Rep_3005_c_32_16
Type: CAZyme
Location: 18973 - 22047 (-)
Gene ID: Rep_3005_c_32_17
Type: STP
Location: 22130 - 23728 (-)
Gene ID: Rep_3005_c_32_18
Type: TC
Location: 23808 - 24713 (-)
Gene ID: Rep_3005_c_32_19
Type: TC
Location: 24728 - 25657 (-)
Gene ID: Rep_3005_c_32_20
Type: TF
Location: 25822 - 28104 (-)
Gene ID: Rep_3005_c_32_21
Type:
Location: 28431 - 29555 (+)
Gene ID: Rep_3005_c_32_22
Type: CAZyme
Location: 29719 - 30771 (+)
Gene ID: Rep_3005_c_32_23
Type: TC
Location: 31141 - 32595 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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