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Cluster: Rep_3005_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3005_c_14 Rep_3005_c_14_15 18526 19389 + 3.A.1.3.10
TC Rep_3005_c_14 Rep_3005_c_14_16 19486 20121 + 3.A.1.3.15
TC Rep_3005_c_14 Rep_3005_c_14_17 20133 20882 + 3.A.1.3.24
CAZyme Rep_3005_c_14 Rep_3005_c_14_18 20914 22845 + GH151
NULL(UNKNOWN) Rep_3005_c_14 Rep_3005_c_14_19 22942 23214 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_3005_c_14 Rep_3005_c_14_20 23352 25103 - 3.A.1.106.2
TC Rep_3005_c_14 Rep_3005_c_14_21 25105 26871 - 3.A.1.21.1
TF Rep_3005_c_14 Rep_3005_c_14_22 26983 27939 - HTH_AraC
TC Rep_3005_c_14 Rep_3005_c_14_23 27947 29410 - 3.A.1.31.2
TC Rep_3005_c_14 Rep_3005_c_14_24 29424 30146 - 3.A.1.31.2
TC Rep_3005_c_14 Rep_3005_c_14_25 30146 30736 - 3.A.1.31.2
Gene ID: Rep_3005_c_14_15
Type: TC
Location: 18526 - 19389 (+)
Gene ID: Rep_3005_c_14_16
Type: TC
Location: 19486 - 20121 (+)
Gene ID: Rep_3005_c_14_17
Type: TC
Location: 20133 - 20882 (+)
Gene ID: Rep_3005_c_14_18
Type: CAZyme
Location: 20914 - 22845 (+)
Gene ID: Rep_3005_c_14_19
Type:
Location: 22942 - 23214 (-)
Gene ID: Rep_3005_c_14_20
Type: TC
Location: 23352 - 25103 (-)
Gene ID: Rep_3005_c_14_21
Type: TC
Location: 25105 - 26871 (-)
Gene ID: Rep_3005_c_14_22
Type: TF
Location: 26983 - 27939 (-)
Gene ID: Rep_3005_c_14_23
Type: TC
Location: 27947 - 29410 (-)
Gene ID: Rep_3005_c_14_24
Type: TC
Location: 29424 - 30146 (-)
Gene ID: Rep_3005_c_14_25
Type: TC
Location: 30146 - 30736 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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