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Cluster: Rep_2980_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2980_c_75 Rep_2980_c_75_14 14942 15796 - 3.A.1.1.46
TC Rep_2980_c_75 Rep_2980_c_75_15 15803 16714 - 3.A.1.1.4
STP Rep_2980_c_75 Rep_2980_c_75_16 16726 19575 - SBP_bac_1
pfam Rep_2980_c_75 Rep_2980_c_75_17 19591 20238 - Lipase_GDSL | Lipase_GDSL_2
CAZyme Rep_2980_c_75 Rep_2980_c_75_18 20288 21439 - CE15
CAZyme Rep_2980_c_75 Rep_2980_c_75_19 21450 22916 - GH13
pfam Rep_2980_c_75 Rep_2980_c_75_20 22929 24680 - ADP_ribosyl_GH
CAZyme Rep_2980_c_75 Rep_2980_c_75_21 24687 26438 - GH13
Gene ID: Rep_2980_c_75_14
Type: TC
Location: 14942 - 15796 (-)
Gene ID: Rep_2980_c_75_15
Type: TC
Location: 15803 - 16714 (-)
Gene ID: Rep_2980_c_75_16
Type: STP
Location: 16726 - 19575 (-)
Gene ID: Rep_2980_c_75_17
Type: pfam
Location: 19591 - 20238 (-)
Gene ID: Rep_2980_c_75_18
Type: CAZyme
Location: 20288 - 21439 (-)
Gene ID: Rep_2980_c_75_19
Type: CAZyme
Location: 21450 - 22916 (-)
Gene ID: Rep_2980_c_75_20
Type: pfam
Location: 22929 - 24680 (-)
Gene ID: Rep_2980_c_75_21
Type: CAZyme
Location: 24687 - 26438 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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