Cluster: Rep_2980_CGC36
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2980
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_2980_c_189 | Rep_2980_c_189_2 | 492 | 1238 | - | CE6 |
| TF | Rep_2980_c_189 | Rep_2980_c_189_3 | 1472 | 3052 | + | HTH_AraC | HTH_AraC |
| TC | Rep_2980_c_189 | Rep_2980_c_189_4 | 3191 | 4135 | + | 3.A.1.1.10 |
| TC | Rep_2980_c_189 | Rep_2980_c_189_5 | 4187 | 5101 | + | 3.A.1.1.10 |
Gene ID: Rep_2980_c_189_2
Type: CAZyme
Location: 492 - 1238 (-)
Type: CAZyme
Location: 492 - 1238 (-)
Gene ID: Rep_2980_c_189_3
Type: TF
Location: 1472 - 3052 (+)
Type: TF
Location: 1472 - 3052 (+)
Gene ID: Rep_2980_c_189_4
Type: TC
Location: 3191 - 4135 (+)
Type: TC
Location: 3191 - 4135 (+)
Gene ID: Rep_2980_c_189_5
Type: TC
Location: 4187 - 5101 (+)
Type: TC
Location: 4187 - 5101 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
UBA5905
Species
UBA5905 sp900764115
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_2980_c_189_2 | vegetarian > omnivore | 2.22862 | 0.04818 |
| Rep_2980_c_189_2 | vegetarian > vegan | 4.90912 | 0.02017 |
| Rep_2980_c_189_4 | vegetarian > omnivore | 2.25422 | 0.04818 |
| Rep_2980_c_189_4 | vegetarian > vegan | 4.89782 | 0.02017 |
| Rep_2980_c_189_5 | vegetarian > omnivore | 3.56344 | 0.04818 |
| Rep_2980_c_189_5 | vegetarian > vegan | 3.59745 | 0.02017 |