Cluster: Rep_2980_CGC30
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 4
- Substrate:
- Genome ID: Rep_2980
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_2980_c_175 | Rep_2980_c_175_1 | 2 | 2020 | - | GH38 |
| pfam | Rep_2980_c_175 | Rep_2980_c_175_2 | 2017 | 3477 | - | Alpha-amylase |
| CAZyme | Rep_2980_c_175 | Rep_2980_c_175_3 | 3506 | 5644 | - | GH78 |
| TC | Rep_2980_c_175 | Rep_2980_c_175_4 | 5687 | 6595 | - | 3.A.1.1.27 |
| TC | Rep_2980_c_175 | Rep_2980_c_175_5 | 6609 | 7502 | - | 3.A.1.1.11 |
| pfam | Rep_2980_c_175 | Rep_2980_c_175_6 | 7499 | 10102 | - | DUF5696 |
| pfam | Rep_2980_c_175 | Rep_2980_c_175_7 | 10118 | 12187 | - | Yip1 |
| TC | Rep_2980_c_175 | Rep_2980_c_175_8 | 12200 | 13072 | - | 3.A.1.1.36 |
| TC | Rep_2980_c_175 | Rep_2980_c_175_9 | 13074 | 13985 | - | 3.A.1.1.46 |
| STP | Rep_2980_c_175 | Rep_2980_c_175_10 | 13999 | 16914 | - | SBP_bac_1 |
| NULL(UNKNOWN) | Rep_2980_c_175 | Rep_2980_c_175_11 | 17218 | 22230 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_2980_c_175 | Rep_2980_c_175_12 | 22227 | 24086 | + | GH13 |
| STP | Rep_2980_c_175 | Rep_2980_c_175_13 | 24099 | 25634 | + | SBP_bac_1 |
| CAZyme | Rep_2980_c_175 | Rep_2980_c_175_14 | 25700 | 26959 | + | GH29 |
Gene ID: Rep_2980_c_175_1
Type: CAZyme
Location: 2 - 2020 (-)
Type: CAZyme
Location: 2 - 2020 (-)
Gene ID: Rep_2980_c_175_2
Type: pfam
Location: 2017 - 3477 (-)
Type: pfam
Location: 2017 - 3477 (-)
Gene ID: Rep_2980_c_175_3
Type: CAZyme
Location: 3506 - 5644 (-)
Type: CAZyme
Location: 3506 - 5644 (-)
Gene ID: Rep_2980_c_175_4
Type: TC
Location: 5687 - 6595 (-)
Type: TC
Location: 5687 - 6595 (-)
Gene ID: Rep_2980_c_175_5
Type: TC
Location: 6609 - 7502 (-)
Type: TC
Location: 6609 - 7502 (-)
Gene ID: Rep_2980_c_175_6
Type: pfam
Location: 7499 - 10102 (-)
Type: pfam
Location: 7499 - 10102 (-)
Gene ID: Rep_2980_c_175_7
Type: pfam
Location: 10118 - 12187 (-)
Type: pfam
Location: 10118 - 12187 (-)
Gene ID: Rep_2980_c_175_8
Type: TC
Location: 12200 - 13072 (-)
Type: TC
Location: 12200 - 13072 (-)
Gene ID: Rep_2980_c_175_9
Type: TC
Location: 13074 - 13985 (-)
Type: TC
Location: 13074 - 13985 (-)
Gene ID: Rep_2980_c_175_10
Type: STP
Location: 13999 - 16914 (-)
Type: STP
Location: 13999 - 16914 (-)
Gene ID: Rep_2980_c_175_11
Type:
Location: 17218 - 22230 (+)
Type:
Location: 17218 - 22230 (+)
Gene ID: Rep_2980_c_175_12
Type: CAZyme
Location: 22227 - 24086 (+)
Type: CAZyme
Location: 22227 - 24086 (+)
Gene ID: Rep_2980_c_175_13
Type: STP
Location: 24099 - 25634 (+)
Type: STP
Location: 24099 - 25634 (+)
Gene ID: Rep_2980_c_175_14
Type: CAZyme
Location: 25700 - 26959 (+)
Type: CAZyme
Location: 25700 - 26959 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
UBA5905
Species
UBA5905 sp900764115
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.