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Cluster: Rep_2980_CGC24

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2980_c_151 Rep_2980_c_151_28 27659 28906 + GT4
CAZyme Rep_2980_c_151 Rep_2980_c_151_29 28903 30093 + GT4
pfam Rep_2980_c_151 Rep_2980_c_151_30 30096 30737 + Hexapep | Hexapep_2
CAZyme Rep_2980_c_151 Rep_2980_c_151_31 30760 32139 + GT2
pfam Rep_2980_c_151 Rep_2980_c_151_32 32170 33093 + Glycos_transf_2 | Glyco_tranf_2_3
CAZyme Rep_2980_c_151 Rep_2980_c_151_33 33077 33865 + GT32
CAZyme Rep_2980_c_151 Rep_2980_c_151_34 33869 34720 + GT2
NULL(UNKNOWN) Rep_2980_c_151 Rep_2980_c_151_35 34735 36003 + NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_2980_c_151 Rep_2980_c_151_36 36006 37142 + Glyco_tran_WbsX
TC Rep_2980_c_151 Rep_2980_c_151_37 37198 38646 + 2.A.66.2.16
Gene ID: Rep_2980_c_151_28
Type: CAZyme
Location: 27659 - 28906 (+)
Gene ID: Rep_2980_c_151_29
Type: CAZyme
Location: 28903 - 30093 (+)
Gene ID: Rep_2980_c_151_30
Type: pfam
Location: 30096 - 30737 (+)
Gene ID: Rep_2980_c_151_31
Type: CAZyme
Location: 30760 - 32139 (+)
Gene ID: Rep_2980_c_151_32
Type: pfam
Location: 32170 - 33093 (+)
Gene ID: Rep_2980_c_151_33
Type: CAZyme
Location: 33077 - 33865 (+)
Gene ID: Rep_2980_c_151_34
Type: CAZyme
Location: 33869 - 34720 (+)
Gene ID: Rep_2980_c_151_35
Type:
Location: 34735 - 36003 (+)
Gene ID: Rep_2980_c_151_36
Type: pfam
Location: 36006 - 37142 (+)
Gene ID: Rep_2980_c_151_37
Type: TC
Location: 37198 - 38646 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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