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Cluster: Rep_2980_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2980_c_18 Rep_2980_c_18_17 17436 18230 - 3.A.1.34.1
TC Rep_2980_c_18 Rep_2980_c_18_18 18223 19182 - 3.A.1.34.1
pfam Rep_2980_c_18 Rep_2980_c_18_19 19199 20164 - ABC_sub_bind
pfam Rep_2980_c_18 Rep_2980_c_18_20 20516 21457 - cobW | DUF1980_C
TC Rep_2980_c_18 Rep_2980_c_18_21 21459 22601 - 9.B.10.1.1
pfam Rep_2980_c_18 Rep_2980_c_18_22 22706 23206 - SpoU_methylase
NULL(UNKNOWN) Rep_2980_c_18 Rep_2980_c_18_23 23324 23506 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_2980_c_18 Rep_2980_c_18_24 23597 24937 - CE17
TF Rep_2980_c_18 Rep_2980_c_18_25 25189 26193 - LacI
pfam Rep_2980_c_18 Rep_2980_c_18_26 26334 27161 - AP_endonuc_2
CAZyme Rep_2980_c_18 Rep_2980_c_18_27 27333 28439 - GT28
Gene ID: Rep_2980_c_18_17
Type: TC
Location: 17436 - 18230 (-)
Gene ID: Rep_2980_c_18_18
Type: TC
Location: 18223 - 19182 (-)
Gene ID: Rep_2980_c_18_19
Type: pfam
Location: 19199 - 20164 (-)
Gene ID: Rep_2980_c_18_20
Type: pfam
Location: 20516 - 21457 (-)
Gene ID: Rep_2980_c_18_21
Type: TC
Location: 21459 - 22601 (-)
Gene ID: Rep_2980_c_18_22
Type: pfam
Location: 22706 - 23206 (-)
Gene ID: Rep_2980_c_18_23
Type:
Location: 23324 - 23506 (+)
Gene ID: Rep_2980_c_18_24
Type: CAZyme
Location: 23597 - 24937 (-)
Gene ID: Rep_2980_c_18_25
Type: TF
Location: 25189 - 26193 (-)
Gene ID: Rep_2980_c_18_26
Type: pfam
Location: 26334 - 27161 (-)
Gene ID: Rep_2980_c_18_27
Type: CAZyme
Location: 27333 - 28439 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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