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Cluster: Rep_2980_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2980_c_123 Rep_2980_c_123_13 9485 10150 - 9.B.149.1.11
pfam Rep_2980_c_123 Rep_2980_c_123_14 10403 10591 + Ribosomal_L28
TC Rep_2980_c_123 Rep_2980_c_123_15 10666 12489 - 3.A.1.106.2
TC Rep_2980_c_123 Rep_2980_c_123_16 12637 14394 - 2.A.58.2.2
CAZyme Rep_2980_c_123 Rep_2980_c_123_17 14422 16137 - GH123
TC Rep_2980_c_123 Rep_2980_c_123_18 16545 19736 - 3.A.25.1.1
NULL(UNKNOWN) Rep_2980_c_123 Rep_2980_c_123_19 19834 20352 - NULL(UNKNOWN)
[View Structural Homologs]
peptidase Rep_2980_c_123 Rep_2980_c_123_20 20579 21316 + M20.UNW
CAZyme Rep_2980_c_123 Rep_2980_c_123_21 21519 23375 - GH127
TF Rep_2980_c_123 Rep_2980_c_123_22 23501 24322 + HTH_AraC
CAZyme Rep_2980_c_123 Rep_2980_c_123_23 24392 25900 - GH51_1
Gene ID: Rep_2980_c_123_13
Type: TC
Location: 9485 - 10150 (-)
Gene ID: Rep_2980_c_123_14
Type: pfam
Location: 10403 - 10591 (+)
Gene ID: Rep_2980_c_123_15
Type: TC
Location: 10666 - 12489 (-)
Gene ID: Rep_2980_c_123_16
Type: TC
Location: 12637 - 14394 (-)
Gene ID: Rep_2980_c_123_17
Type: CAZyme
Location: 14422 - 16137 (-)
Gene ID: Rep_2980_c_123_18
Type: TC
Location: 16545 - 19736 (-)
Gene ID: Rep_2980_c_123_19
Type:
Location: 19834 - 20352 (-)
Gene ID: Rep_2980_c_123_20
Type: peptidase
Location: 20579 - 21316 (+)
Gene ID: Rep_2980_c_123_21
Type: CAZyme
Location: 21519 - 23375 (-)
Gene ID: Rep_2980_c_123_22
Type: TF
Location: 23501 - 24322 (+)
Gene ID: Rep_2980_c_123_23
Type: CAZyme
Location: 24392 - 25900 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2980_c_123_14 vegetarian > omnivore 2.08545 0.04818
Rep_2980_c_123_14 vegetarian > vegan 3.21186 0.02017

🧭 Explore Read Mapping of CGC

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