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Cluster: Rep_2980_CGC15

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2980_c_117 Rep_2980_c_117_2 1573 2481 + 3.A.1.1.11
TC Rep_2980_c_117 Rep_2980_c_117_3 2537 3424 + 3.A.1.1.39
pfam Rep_2980_c_117 Rep_2980_c_117_4 3462 5579 + Yip1
pfam Rep_2980_c_117 Rep_2980_c_117_5 5596 7818 + DUF5696
TC Rep_2980_c_117 Rep_2980_c_117_6 7815 8699 + 3.A.1.1.7
TC Rep_2980_c_117 Rep_2980_c_117_7 8722 9684 + 3.A.1.1.11
NULL(UNKNOWN) Rep_2980_c_117 Rep_2980_c_117_8 9763 11205 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_2980_c_117 Rep_2980_c_117_9 11226 13184 + GH5_46
CAZyme Rep_2980_c_117 Rep_2980_c_117_10 13207 14853 + GH5
Gene ID: Rep_2980_c_117_2
Type: TC
Location: 1573 - 2481 (+)
Gene ID: Rep_2980_c_117_3
Type: TC
Location: 2537 - 3424 (+)
Gene ID: Rep_2980_c_117_4
Type: pfam
Location: 3462 - 5579 (+)
Gene ID: Rep_2980_c_117_5
Type: pfam
Location: 5596 - 7818 (+)
Gene ID: Rep_2980_c_117_6
Type: TC
Location: 7815 - 8699 (+)
Gene ID: Rep_2980_c_117_7
Type: TC
Location: 8722 - 9684 (+)
Gene ID: Rep_2980_c_117_8
Type:
Location: 9763 - 11205 (+)
Gene ID: Rep_2980_c_117_9
Type: CAZyme
Location: 11226 - 13184 (+)
Gene ID: Rep_2980_c_117_10
Type: CAZyme
Location: 13207 - 14853 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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