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Cluster: Rep_2980_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2980_c_80 Rep_2980_c_80_5 3423 5393 - GH36
pfam Rep_2980_c_80 Rep_2980_c_80_6 5412 6290 - EamA | Multi_Drug_Res
TF Rep_2980_c_80 Rep_2980_c_80_7 6406 7209 + HTH_AraC | HTH_AraC
TC Rep_2980_c_80 Rep_2980_c_80_8 7445 7675 + 9.A.8.1.6
TC Rep_2980_c_80 Rep_2980_c_80_9 7672 9675 + 9.A.8.1.6
CAZyme Rep_2980_c_80 Rep_2980_c_80_10 9922 11247 + GH39
TC Rep_2980_c_80 Rep_2980_c_80_11 11679 12698 + 3.A.1.24.2
TC Rep_2980_c_80 Rep_2980_c_80_12 12691 13377 + 3.A.1.24.5
TC Rep_2980_c_80 Rep_2980_c_80_13 13440 14246 + 3.A.1.24.5
pfam Rep_2980_c_80 Rep_2980_c_80_14 14389 15042 - Lipase_GDSL | Lipase_GDSL_2
pfam Rep_2980_c_80 Rep_2980_c_80_15 15057 16538 - DUF1846 | DUF1846_C
CAZyme Rep_2980_c_80 Rep_2980_c_80_16 16726 19575 - GH2
CAZyme Rep_2980_c_80 Rep_2980_c_80_17 19604 21559 - GH151
Gene ID: Rep_2980_c_80_5
Type: CAZyme
Location: 3423 - 5393 (-)
Gene ID: Rep_2980_c_80_6
Type: pfam
Location: 5412 - 6290 (-)
Gene ID: Rep_2980_c_80_7
Type: TF
Location: 6406 - 7209 (+)
Gene ID: Rep_2980_c_80_8
Type: TC
Location: 7445 - 7675 (+)
Gene ID: Rep_2980_c_80_9
Type: TC
Location: 7672 - 9675 (+)
Gene ID: Rep_2980_c_80_10
Type: CAZyme
Location: 9922 - 11247 (+)
Gene ID: Rep_2980_c_80_11
Type: TC
Location: 11679 - 12698 (+)
Gene ID: Rep_2980_c_80_12
Type: TC
Location: 12691 - 13377 (+)
Gene ID: Rep_2980_c_80_13
Type: TC
Location: 13440 - 14246 (+)
Gene ID: Rep_2980_c_80_14
Type: pfam
Location: 14389 - 15042 (-)
Gene ID: Rep_2980_c_80_15
Type: pfam
Location: 15057 - 16538 (-)
Gene ID: Rep_2980_c_80_16
Type: CAZyme
Location: 16726 - 19575 (-)
Gene ID: Rep_2980_c_80_17
Type: CAZyme
Location: 19604 - 21559 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2980_c_80_8 vegetarian > vegan 1.08026 0.02017

🧭 Explore Read Mapping of CGC

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