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Cluster: Rep_297_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_297_c_146 Rep_297_c_146_2 339 1964 - GH43_10
CAZyme Rep_297_c_146 Rep_297_c_146_3 2158 4956 - CBM6
NULL(UNKNOWN) Rep_297_c_146 Rep_297_c_146_4 5062 6096 - NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_297_c_146 Rep_297_c_146_5 6288 8207 - SusD_RagB | SusD-like_3
TC Rep_297_c_146 Rep_297_c_146_6 8247 11606 - 1.B.14.6.1
STP Rep_297_c_146 Rep_297_c_146_7 11794 12303 - Sigma70_r2 | Sigma70_r4_2
TF Rep_297_c_146 Rep_297_c_146_8 12510 15287 - HTH_AraC
CAZyme Rep_297_c_146 Rep_297_c_146_9 15377 16795 - GH28
CAZyme Rep_297_c_146 Rep_297_c_146_10 16914 18176 - GH88
CAZyme Rep_297_c_146 Rep_297_c_146_11 18173 20101 - GH97
pfam Rep_297_c_146 Rep_297_c_146_12 20149 22386 - Hepar_II_III_C
TC Rep_297_c_146 Rep_297_c_146_13 22495 24471 - 2.A.67.4.2
Gene ID: Rep_297_c_146_2
Type: CAZyme
Location: 339 - 1964 (-)
Gene ID: Rep_297_c_146_3
Type: CAZyme
Location: 2158 - 4956 (-)
Gene ID: Rep_297_c_146_4
Type:
Location: 5062 - 6096 (-)
Gene ID: Rep_297_c_146_5
Type: pfam
Location: 6288 - 8207 (-)
Gene ID: Rep_297_c_146_6
Type: TC
Location: 8247 - 11606 (-)
Gene ID: Rep_297_c_146_7
Type: STP
Location: 11794 - 12303 (-)
Gene ID: Rep_297_c_146_8
Type: TF
Location: 12510 - 15287 (-)
Gene ID: Rep_297_c_146_9
Type: CAZyme
Location: 15377 - 16795 (-)
Gene ID: Rep_297_c_146_10
Type: CAZyme
Location: 16914 - 18176 (-)
Gene ID: Rep_297_c_146_11
Type: CAZyme
Location: 18173 - 20101 (-)
Gene ID: Rep_297_c_146_12
Type: pfam
Location: 20149 - 22386 (-)
Gene ID: Rep_297_c_146_13
Type: TC
Location: 22495 - 24471 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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