Cluster: Rep_297_CGC18
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 6
- Substrate: xylan
- Genome ID: Rep_297
- CGC Family ID: CGCFAM_00238
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_297_c_109 | Rep_297_c_109_25 | 39759 | 41975 | - | GH10 |
| pfam | Rep_297_c_109 | Rep_297_c_109_26 | 42011 | 43024 | - | BT_3987-like_N | DUF5627 |
| pfam | Rep_297_c_109 | Rep_297_c_109_27 | 43077 | 44843 | - | SusD_RagB | SusD-like_3 |
| TC | Rep_297_c_109 | Rep_297_c_109_28 | 44865 | 47687 | - | 1.B.14.6.1 |
| pfam | Rep_297_c_109 | Rep_297_c_109_29 | 47709 | 49592 | - | SusD_RagB | SusD-like_3 |
| TC | Rep_297_c_109 | Rep_297_c_109_30 | 49608 | 52142 | - | 1.B.14.6.1 |
| TC | Rep_297_c_109 | Rep_297_c_109_31 | 52194 | 52715 | - | 1.B.14.6.1 |
| CAZyme | Rep_297_c_109 | Rep_297_c_109_32 | 52752 | 54500 | - | CBM91 | GH43_12 |
| CAZyme | Rep_297_c_109 | Rep_297_c_109_33 | 54620 | 56233 | - | CBM91 | GH43_10 |
| CAZyme | Rep_297_c_109 | Rep_297_c_109_34 | 56428 | 58311 | - | CE20 | CE20 |
| CAZyme | Rep_297_c_109 | Rep_297_c_109_35 | 58496 | 60514 | + | GH67 |
| CAZyme | Rep_297_c_109 | Rep_297_c_109_36 | 60602 | 63094 | + | CBM6 | CE1 | GH43_29 |
Gene ID: Rep_297_c_109_25
Type: CAZyme
Location: 39759 - 41975 (-)
Type: CAZyme
Location: 39759 - 41975 (-)
Gene ID: Rep_297_c_109_26
Type: pfam
Location: 42011 - 43024 (-)
Type: pfam
Location: 42011 - 43024 (-)
Gene ID: Rep_297_c_109_27
Type: pfam
Location: 43077 - 44843 (-)
Type: pfam
Location: 43077 - 44843 (-)
Gene ID: Rep_297_c_109_28
Type: TC
Location: 44865 - 47687 (-)
Type: TC
Location: 44865 - 47687 (-)
Gene ID: Rep_297_c_109_29
Type: pfam
Location: 47709 - 49592 (-)
Type: pfam
Location: 47709 - 49592 (-)
Gene ID: Rep_297_c_109_30
Type: TC
Location: 49608 - 52142 (-)
Type: TC
Location: 49608 - 52142 (-)
Gene ID: Rep_297_c_109_31
Type: TC
Location: 52194 - 52715 (-)
Type: TC
Location: 52194 - 52715 (-)
Gene ID: Rep_297_c_109_32
Type: CAZyme
Location: 52752 - 54500 (-)
Type: CAZyme
Location: 52752 - 54500 (-)
Gene ID: Rep_297_c_109_33
Type: CAZyme
Location: 54620 - 56233 (-)
Type: CAZyme
Location: 54620 - 56233 (-)
Gene ID: Rep_297_c_109_34
Type: CAZyme
Location: 56428 - 58311 (-)
Type: CAZyme
Location: 56428 - 58311 (-)
Gene ID: Rep_297_c_109_35
Type: CAZyme
Location: 58496 - 60514 (+)
Type: CAZyme
Location: 58496 - 60514 (+)
Gene ID: Rep_297_c_109_36
Type: CAZyme
Location: 60602 - 63094 (+)
Type: CAZyme
Location: 60602 - 63094 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Muribaculaceae
Genus
Lepagella
Species
Lepagella sp947575235
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.