Cluster: Rep_2978_CGC8
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 8
- Substrate:
- Genome ID: Rep_2978
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2978_c_3 | Rep_2978_c_3_37 | 42625 | 43299 | - | 3.A.1.122.1 |
| TF | Rep_2978_c_3 | Rep_2978_c_3_38 | 43333 | 44139 | - | HTH_AraC | HTH_AraC |
| CAZyme | Rep_2978_c_3 | Rep_2978_c_3_39 | 44285 | 45115 | + | GH16 |
| pfam | Rep_2978_c_3 | Rep_2978_c_3_40 | 45112 | 45786 | + | Lactamase_B_2 | Lactamase_B_3 |
| pfam | Rep_2978_c_3 | Rep_2978_c_3_41 | 45783 | 46943 | + | MR_MLE_N | MR_MLE_C |
| CAZyme | Rep_2978_c_3 | Rep_2978_c_3_42 | 46955 | 48385 | + | GH39 |
| pfam | Rep_2978_c_3 | Rep_2978_c_3_43 | 48382 | 49191 | + | adh_short | KR | adh_short_C2 | SDR |
| CAZyme | Rep_2978_c_3 | Rep_2978_c_3_44 | 49194 | 50786 | + | GH3 |
| CAZyme | Rep_2978_c_3 | Rep_2978_c_3_45 | 50904 | 51935 | + | GT2 |
| CAZyme | Rep_2978_c_3 | Rep_2978_c_3_46 | 51941 | 53017 | + | GT4 |
| CAZyme | Rep_2978_c_3 | Rep_2978_c_3_47 | 53077 | 54378 | - | GH180 |
| CAZyme | Rep_2978_c_3 | Rep_2978_c_3_48 | 54408 | 55364 | - | CE2 |
| pfam | Rep_2978_c_3 | Rep_2978_c_3_49 | 55413 | 56819 | - | Amino_oxidase | NAD_binding_8 |
| CAZyme | Rep_2978_c_3 | Rep_2978_c_3_50 | 56821 | 58269 | - | GH77 |
| TC | Rep_2978_c_3 | Rep_2978_c_3_51 | 58280 | 59128 | - | 3.A.1.1.45 |
| TC | Rep_2978_c_3 | Rep_2978_c_3_52 | 59125 | 60006 | - | 3.A.1.1.45 |
| TC | Rep_2978_c_3 | Rep_2978_c_3_53 | 60025 | 61326 | - | 3.A.1.1.45 |
Gene ID: Rep_2978_c_3_37
Type: TC
Location: 42625 - 43299 (-)
Type: TC
Location: 42625 - 43299 (-)
Gene ID: Rep_2978_c_3_38
Type: TF
Location: 43333 - 44139 (-)
Type: TF
Location: 43333 - 44139 (-)
Gene ID: Rep_2978_c_3_39
Type: CAZyme
Location: 44285 - 45115 (+)
Type: CAZyme
Location: 44285 - 45115 (+)
Gene ID: Rep_2978_c_3_40
Type: pfam
Location: 45112 - 45786 (+)
Type: pfam
Location: 45112 - 45786 (+)
Gene ID: Rep_2978_c_3_41
Type: pfam
Location: 45783 - 46943 (+)
Type: pfam
Location: 45783 - 46943 (+)
Gene ID: Rep_2978_c_3_42
Type: CAZyme
Location: 46955 - 48385 (+)
Type: CAZyme
Location: 46955 - 48385 (+)
Gene ID: Rep_2978_c_3_43
Type: pfam
Location: 48382 - 49191 (+)
Type: pfam
Location: 48382 - 49191 (+)
Gene ID: Rep_2978_c_3_44
Type: CAZyme
Location: 49194 - 50786 (+)
Type: CAZyme
Location: 49194 - 50786 (+)
Gene ID: Rep_2978_c_3_45
Type: CAZyme
Location: 50904 - 51935 (+)
Type: CAZyme
Location: 50904 - 51935 (+)
Gene ID: Rep_2978_c_3_46
Type: CAZyme
Location: 51941 - 53017 (+)
Type: CAZyme
Location: 51941 - 53017 (+)
Gene ID: Rep_2978_c_3_47
Type: CAZyme
Location: 53077 - 54378 (-)
Type: CAZyme
Location: 53077 - 54378 (-)
Gene ID: Rep_2978_c_3_48
Type: CAZyme
Location: 54408 - 55364 (-)
Type: CAZyme
Location: 54408 - 55364 (-)
Gene ID: Rep_2978_c_3_49
Type: pfam
Location: 55413 - 56819 (-)
Type: pfam
Location: 55413 - 56819 (-)
Gene ID: Rep_2978_c_3_50
Type: CAZyme
Location: 56821 - 58269 (-)
Type: CAZyme
Location: 56821 - 58269 (-)
Gene ID: Rep_2978_c_3_51
Type: TC
Location: 58280 - 59128 (-)
Type: TC
Location: 58280 - 59128 (-)
Gene ID: Rep_2978_c_3_52
Type: TC
Location: 59125 - 60006 (-)
Type: TC
Location: 59125 - 60006 (-)
Gene ID: Rep_2978_c_3_53
Type: TC
Location: 60025 - 61326 (-)
Type: TC
Location: 60025 - 61326 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
UBA5905
Species
UBA5905 sp900549155
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.