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Cluster: Rep_2978_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2978_c_1 Rep_2978_c_1_56 54488 55558 - GH179
pfam Rep_2978_c_1 Rep_2978_c_1_57 55561 56415 - AP_endonuc_2
TF Rep_2978_c_1 Rep_2978_c_1_58 56536 57366 + HTH_AraC | HTH_AraC
TC Rep_2978_c_1 Rep_2978_c_1_59 57398 58753 - 9.B.34.1.2
NULL(UNKNOWN) Rep_2978_c_1 Rep_2978_c_1_60 58785 59501 - NULL(UNKNOWN)
[View Structural Homologs]
STP Rep_2978_c_1 Rep_2978_c_1_61 59498 60886 - EAL
CAZyme Rep_2978_c_1 Rep_2978_c_1_62 60879 61931 - GT2
CAZyme Rep_2978_c_1 Rep_2978_c_1_63 61943 62938 - GT2
CAZyme Rep_2978_c_1 Rep_2978_c_1_64 62942 63997 - GT2
CAZyme Rep_2978_c_1 Rep_2978_c_1_65 63994 65211 - GT4
Gene ID: Rep_2978_c_1_56
Type: CAZyme
Location: 54488 - 55558 (-)
Gene ID: Rep_2978_c_1_57
Type: pfam
Location: 55561 - 56415 (-)
Gene ID: Rep_2978_c_1_58
Type: TF
Location: 56536 - 57366 (+)
Gene ID: Rep_2978_c_1_59
Type: TC
Location: 57398 - 58753 (-)
Gene ID: Rep_2978_c_1_60
Type:
Location: 58785 - 59501 (-)
Gene ID: Rep_2978_c_1_61
Type: STP
Location: 59498 - 60886 (-)
Gene ID: Rep_2978_c_1_62
Type: CAZyme
Location: 60879 - 61931 (-)
Gene ID: Rep_2978_c_1_63
Type: CAZyme
Location: 61943 - 62938 (-)
Gene ID: Rep_2978_c_1_64
Type: CAZyme
Location: 62942 - 63997 (-)
Gene ID: Rep_2978_c_1_65
Type: CAZyme
Location: 63994 - 65211 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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