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Cluster: Rep_2978_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2978_c_0 Rep_2978_c_0_103 127025 127717 + 1.C.82.1.1
pfam Rep_2978_c_0 Rep_2978_c_0_104 127970 128491 + Ribosomal_L10
pfam Rep_2978_c_0 Rep_2978_c_0_105 128527 128904 + Ribosomal_L12 | Ribosomal_L12_N
CAZyme Rep_2978_c_0 Rep_2978_c_0_106 129063 130412 + GH30_3
TC Rep_2978_c_0 Rep_2978_c_0_107 130466 131830 - 2.A.26.1.3
CAZyme Rep_2978_c_0 Rep_2978_c_0_108 132005 133321 + GH39
CAZyme Rep_2978_c_0 Rep_2978_c_0_109 133442 134398 - GT2
TC Rep_2978_c_0 Rep_2978_c_0_110 134411 135574 - 9.B.34.1.2
Gene ID: Rep_2978_c_0_103
Type: TC
Location: 127025 - 127717 (+)
Gene ID: Rep_2978_c_0_104
Type: pfam
Location: 127970 - 128491 (+)
Gene ID: Rep_2978_c_0_105
Type: pfam
Location: 128527 - 128904 (+)
Gene ID: Rep_2978_c_0_106
Type: CAZyme
Location: 129063 - 130412 (+)
Gene ID: Rep_2978_c_0_107
Type: TC
Location: 130466 - 131830 (-)
Gene ID: Rep_2978_c_0_108
Type: CAZyme
Location: 132005 - 133321 (+)
Gene ID: Rep_2978_c_0_109
Type: CAZyme
Location: 133442 - 134398 (-)
Gene ID: Rep_2978_c_0_110
Type: TC
Location: 134411 - 135574 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2978_c_0_105 vegetarian > vegan 1.13876 0.01287

🧭 Explore Read Mapping of CGC

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