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Cluster: Rep_2978_CGC25

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2978_c_27 Rep_2978_c_27_8 13139 16534 + GH31
STP Rep_2978_c_27 Rep_2978_c_27_9 16877 19819 + SBP_bac_1
TC Rep_2978_c_27 Rep_2978_c_27_10 19819 20718 + 3.A.1.1.34
TC Rep_2978_c_27 Rep_2978_c_27_11 20732 21631 + 3.A.1.1.29
pfam Rep_2978_c_27 Rep_2978_c_27_12 21648 23720 + Yip1 | TPR_16
pfam Rep_2978_c_27 Rep_2978_c_27_13 23704 25992 + DUF5696
TC Rep_2978_c_27 Rep_2978_c_27_14 25996 26916 + 3.A.1.1.34
TC Rep_2978_c_27 Rep_2978_c_27_15 26913 27863 + 3.A.1.1.11
CAZyme Rep_2978_c_27 Rep_2978_c_27_16 27986 29305 - GH10
Gene ID: Rep_2978_c_27_8
Type: CAZyme
Location: 13139 - 16534 (+)
Gene ID: Rep_2978_c_27_9
Type: STP
Location: 16877 - 19819 (+)
Gene ID: Rep_2978_c_27_10
Type: TC
Location: 19819 - 20718 (+)
Gene ID: Rep_2978_c_27_11
Type: TC
Location: 20732 - 21631 (+)
Gene ID: Rep_2978_c_27_12
Type: pfam
Location: 21648 - 23720 (+)
Gene ID: Rep_2978_c_27_13
Type: pfam
Location: 23704 - 25992 (+)
Gene ID: Rep_2978_c_27_14
Type: TC
Location: 25996 - 26916 (+)
Gene ID: Rep_2978_c_27_15
Type: TC
Location: 26913 - 27863 (+)
Gene ID: Rep_2978_c_27_16
Type: CAZyme
Location: 27986 - 29305 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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