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Cluster: Rep_2978_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2978_c_21 Rep_2978_c_21_8 9604 10407 - CE4
TC Rep_2978_c_21 Rep_2978_c_21_9 10661 11476 + 2.A.88.3.1
NULL(UNKNOWN) Rep_2978_c_21 Rep_2978_c_21_10 11516 11632 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_2978_c_21 Rep_2978_c_21_11 11778 12542 + 3.A.1.17.8
TC Rep_2978_c_21 Rep_2978_c_21_12 12535 13341 + 3.A.1.17.8
pfam Rep_2978_c_21 Rep_2978_c_21_13 13355 14350 + NMT1 | Phosphonate-bd | NMT1_2
pfam Rep_2978_c_21 Rep_2978_c_21_14 14582 15547 + AP_endonuc_2
CAZyme Rep_2978_c_21 Rep_2978_c_21_15 15562 16614 + GH179
Gene ID: Rep_2978_c_21_8
Type: CAZyme
Location: 9604 - 10407 (-)
Gene ID: Rep_2978_c_21_9
Type: TC
Location: 10661 - 11476 (+)
Gene ID: Rep_2978_c_21_10
Type:
Location: 11516 - 11632 (+)
Gene ID: Rep_2978_c_21_11
Type: TC
Location: 11778 - 12542 (+)
Gene ID: Rep_2978_c_21_12
Type: TC
Location: 12535 - 13341 (+)
Gene ID: Rep_2978_c_21_13
Type: pfam
Location: 13355 - 14350 (+)
Gene ID: Rep_2978_c_21_14
Type: pfam
Location: 14582 - 15547 (+)
Gene ID: Rep_2978_c_21_15
Type: CAZyme
Location: 15562 - 16614 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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