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Cluster: Rep_2978_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2978_c_20 Rep_2978_c_20_17 15317 16054 + GH16_3
pfam Rep_2978_c_20 Rep_2978_c_20_18 16167 18440 + Flg_new_2 | Flg_new_2
STP Rep_2978_c_20 Rep_2978_c_20_19 18474 21323 + SBP_bac_1
TC Rep_2978_c_20 Rep_2978_c_20_20 21336 22259 + 3.A.1.1.4
TC Rep_2978_c_20 Rep_2978_c_20_21 22339 23133 + 3.A.1.1.39
pfam Rep_2978_c_20 Rep_2978_c_20_22 23150 25240 + Yip1
pfam Rep_2978_c_20 Rep_2978_c_20_23 25282 27798 + DUF5696
TC Rep_2978_c_20 Rep_2978_c_20_24 27795 28709 + 3.A.1.1.11
TC Rep_2978_c_20 Rep_2978_c_20_25 28723 29622 + 3.A.1.1.11
Gene ID: Rep_2978_c_20_17
Type: CAZyme
Location: 15317 - 16054 (+)
Gene ID: Rep_2978_c_20_18
Type: pfam
Location: 16167 - 18440 (+)
Gene ID: Rep_2978_c_20_19
Type: STP
Location: 18474 - 21323 (+)
Gene ID: Rep_2978_c_20_20
Type: TC
Location: 21336 - 22259 (+)
Gene ID: Rep_2978_c_20_21
Type: TC
Location: 22339 - 23133 (+)
Gene ID: Rep_2978_c_20_22
Type: pfam
Location: 23150 - 25240 (+)
Gene ID: Rep_2978_c_20_23
Type: pfam
Location: 25282 - 27798 (+)
Gene ID: Rep_2978_c_20_24
Type: TC
Location: 27795 - 28709 (+)
Gene ID: Rep_2978_c_20_25
Type: TC
Location: 28723 - 29622 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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