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Cluster: Rep_2978_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2978_c_16 Rep_2978_c_16_8 5998 7335 + 2.A.66.1.13
CAZyme Rep_2978_c_16 Rep_2978_c_16_9 7372 9555 - GH36
peptidase Rep_2978_c_16 Rep_2978_c_16_10 9567 10742 - M20.UPB
TC Rep_2978_c_16 Rep_2978_c_16_11 10979 12655 - 3.A.1.5.41
TC Rep_2978_c_16 Rep_2978_c_16_12 12749 13747 - 3.A.1.5.37
TC Rep_2978_c_16 Rep_2978_c_16_13 13740 14744 - 3.A.1.5.2
TC Rep_2978_c_16 Rep_2978_c_16_14 14761 15801 - 3.A.1.5.19
TC Rep_2978_c_16 Rep_2978_c_16_15 15821 16738 - 3.A.1.5.2
Gene ID: Rep_2978_c_16_8
Type: TC
Location: 5998 - 7335 (+)
Gene ID: Rep_2978_c_16_9
Type: CAZyme
Location: 7372 - 9555 (-)
Gene ID: Rep_2978_c_16_10
Type: peptidase
Location: 9567 - 10742 (-)
Gene ID: Rep_2978_c_16_11
Type: TC
Location: 10979 - 12655 (-)
Gene ID: Rep_2978_c_16_12
Type: TC
Location: 12749 - 13747 (-)
Gene ID: Rep_2978_c_16_13
Type: TC
Location: 13740 - 14744 (-)
Gene ID: Rep_2978_c_16_14
Type: TC
Location: 14761 - 15801 (-)
Gene ID: Rep_2978_c_16_15
Type: TC
Location: 15821 - 16738 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2978_c_16_14 vegan > omnivore 1.27239 0.01882

🧭 Explore Read Mapping of CGC

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