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Cluster: Rep_2978_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2978_c_9 Rep_2978_c_9_39 33820 36657 - GH2
TF Rep_2978_c_9 Rep_2978_c_9_40 36925 37923 + LacI
CAZyme Rep_2978_c_9 Rep_2978_c_9_41 37943 39613 + GH78
pfam Rep_2978_c_9 Rep_2978_c_9_42 39742 47205 + CBM_4_9 | CBM_4_9 | Glyco_hydro_42
STP Rep_2978_c_9 Rep_2978_c_9_43 47202 48737 + SBP_bac_1
TC Rep_2978_c_9 Rep_2978_c_9_44 48760 49677 + 3.A.1.1.21
TC Rep_2978_c_9 Rep_2978_c_9_45 49679 50827 + 3.A.1.1.41
Gene ID: Rep_2978_c_9_39
Type: CAZyme
Location: 33820 - 36657 (-)
Gene ID: Rep_2978_c_9_40
Type: TF
Location: 36925 - 37923 (+)
Gene ID: Rep_2978_c_9_41
Type: CAZyme
Location: 37943 - 39613 (+)
Gene ID: Rep_2978_c_9_42
Type: pfam
Location: 39742 - 47205 (+)
Gene ID: Rep_2978_c_9_43
Type: STP
Location: 47202 - 48737 (+)
Gene ID: Rep_2978_c_9_44
Type: TC
Location: 48760 - 49677 (+)
Gene ID: Rep_2978_c_9_45
Type: TC
Location: 49679 - 50827 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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