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Cluster: Rep_2978_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2978_c_8 Rep_2978_c_8_22 23106 24485 - 2.A.40.1.4
STP Rep_2978_c_8 Rep_2978_c_8_23 24552 25091 - Pribosyltran
TC Rep_2978_c_8 Rep_2978_c_8_24 25404 27443 + 9.B.18.2.1
pfam Rep_2978_c_8 Rep_2978_c_8_25 27464 28513 + EpsG
CAZyme Rep_2978_c_8 Rep_2978_c_8_26 28643 29779 + GT4
CAZyme Rep_2978_c_8 Rep_2978_c_8_27 29736 30950 + GT4
CAZyme Rep_2978_c_8 Rep_2978_c_8_28 30913 31935 + GT2
pfam Rep_2978_c_8 Rep_2978_c_8_29 31949 32890 + ATPgrasp_TupA
pfam Rep_2978_c_8 Rep_2978_c_8_30 32925 34451 + Polysacc_synt
TC Rep_2978_c_8 Rep_2978_c_8_31 34453 35499 + 9.B.18.2.1
Gene ID: Rep_2978_c_8_22
Type: TC
Location: 23106 - 24485 (-)
Gene ID: Rep_2978_c_8_23
Type: STP
Location: 24552 - 25091 (-)
Gene ID: Rep_2978_c_8_24
Type: TC
Location: 25404 - 27443 (+)
Gene ID: Rep_2978_c_8_25
Type: pfam
Location: 27464 - 28513 (+)
Gene ID: Rep_2978_c_8_26
Type: CAZyme
Location: 28643 - 29779 (+)
Gene ID: Rep_2978_c_8_27
Type: CAZyme
Location: 29736 - 30950 (+)
Gene ID: Rep_2978_c_8_28
Type: CAZyme
Location: 30913 - 31935 (+)
Gene ID: Rep_2978_c_8_29
Type: pfam
Location: 31949 - 32890 (+)
Gene ID: Rep_2978_c_8_30
Type: pfam
Location: 32925 - 34451 (+)
Gene ID: Rep_2978_c_8_31
Type: TC
Location: 34453 - 35499 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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