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Cluster: Rep_295_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_295_c_55 Rep_295_c_55_17 18160 20100 - GH97
pfam Rep_295_c_55 Rep_295_c_55_18 20848 21309 + RseC_MucC
TC Rep_295_c_55 Rep_295_c_55_19 21327 22145 + 3.D.6.1.3
TC Rep_295_c_55 Rep_295_c_55_20 22214 23524 + 3.D.6.1.2
TC Rep_295_c_55 Rep_295_c_55_21 23527 24507 + 3.D.6.1.2
pfam Rep_295_c_55 Rep_295_c_55_22 24504 25106 + FMN_bind
TC Rep_295_c_55 Rep_295_c_55_23 25103 25693 + 3.D.6.1.2
TC Rep_295_c_55 Rep_295_c_55_24 25699 26280 + 3.D.6.1.2
NULL(UNKNOWN) Rep_295_c_55 Rep_295_c_55_25 26103 26450 - NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_295_c_55 Rep_295_c_55_26 26862 27452 - CW_7
CAZyme Rep_295_c_55 Rep_295_c_55_27 27579 28880 - CE1
Gene ID: Rep_295_c_55_17
Type: CAZyme
Location: 18160 - 20100 (-)
Gene ID: Rep_295_c_55_18
Type: pfam
Location: 20848 - 21309 (+)
Gene ID: Rep_295_c_55_19
Type: TC
Location: 21327 - 22145 (+)
Gene ID: Rep_295_c_55_20
Type: TC
Location: 22214 - 23524 (+)
Gene ID: Rep_295_c_55_21
Type: TC
Location: 23527 - 24507 (+)
Gene ID: Rep_295_c_55_22
Type: pfam
Location: 24504 - 25106 (+)
Gene ID: Rep_295_c_55_23
Type: TC
Location: 25103 - 25693 (+)
Gene ID: Rep_295_c_55_24
Type: TC
Location: 25699 - 26280 (+)
Gene ID: Rep_295_c_55_25
Type:
Location: 26103 - 26450 (-)
Gene ID: Rep_295_c_55_26
Type: pfam
Location: 26862 - 27452 (-)
Gene ID: Rep_295_c_55_27
Type: CAZyme
Location: 27579 - 28880 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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