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Cluster: Rep_295_CGC29

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_295_c_304 Rep_295_c_304_5 3847 4929 + GH43_19
CAZyme Rep_295_c_304 Rep_295_c_304_6 5035 6939 - GH43_4
pfam Rep_295_c_304 Rep_295_c_304_7 6983 8761 - SusD_RagB | SusD-like_3
TC Rep_295_c_304 Rep_295_c_304_8 8847 12080 - 1.B.14.6.1
pfam Rep_295_c_304 Rep_295_c_304_9 12113 13882 - SusD_RagB | SusD-like_3
TC Rep_295_c_304 Rep_295_c_304_10 13895 17023 - 1.B.14.6.1
pfam Rep_295_c_304 Rep_295_c_304_11 17056 18885 - Laminin_G_3
TF Rep_295_c_304 Rep_295_c_304_12 19044 23390 - HTH_AraC
CAZyme Rep_295_c_304 Rep_295_c_304_13 23579 25102 + GH43_4
Gene ID: Rep_295_c_304_5
Type: CAZyme
Location: 3847 - 4929 (+)
Gene ID: Rep_295_c_304_6
Type: CAZyme
Location: 5035 - 6939 (-)
Gene ID: Rep_295_c_304_7
Type: pfam
Location: 6983 - 8761 (-)
Gene ID: Rep_295_c_304_8
Type: TC
Location: 8847 - 12080 (-)
Gene ID: Rep_295_c_304_9
Type: pfam
Location: 12113 - 13882 (-)
Gene ID: Rep_295_c_304_10
Type: TC
Location: 13895 - 17023 (-)
Gene ID: Rep_295_c_304_11
Type: pfam
Location: 17056 - 18885 (-)
Gene ID: Rep_295_c_304_12
Type: TF
Location: 19044 - 23390 (-)
Gene ID: Rep_295_c_304_13
Type: CAZyme
Location: 23579 - 25102 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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