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Cluster: Rep_295_CGC28

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_295_c_279 Rep_295_c_279_3 407 2890 - GH115
TF Rep_295_c_279 Rep_295_c_279_4 3133 7149 + HTH_AraC
STP Rep_295_c_279 Rep_295_c_279_5 7189 7788 - Nitroreductase
TC Rep_295_c_279 Rep_295_c_279_6 7886 9310 + 3.A.1.18.3
TC Rep_295_c_279 Rep_295_c_279_7 9400 10356 + 3.A.1.23.5
pfam Rep_295_c_279 Rep_295_c_279_8 10363 11148 + CbiQ
TC Rep_295_c_279 Rep_295_c_279_9 11145 11846 + 3.A.1.23.2
TC Rep_295_c_279 Rep_295_c_279_10 11843 12841 - 3.A.1.13.2
Gene ID: Rep_295_c_279_3
Type: CAZyme
Location: 407 - 2890 (-)
Gene ID: Rep_295_c_279_4
Type: TF
Location: 3133 - 7149 (+)
Gene ID: Rep_295_c_279_5
Type: STP
Location: 7189 - 7788 (-)
Gene ID: Rep_295_c_279_6
Type: TC
Location: 7886 - 9310 (+)
Gene ID: Rep_295_c_279_7
Type: TC
Location: 9400 - 10356 (+)
Gene ID: Rep_295_c_279_8
Type: pfam
Location: 10363 - 11148 (+)
Gene ID: Rep_295_c_279_9
Type: TC
Location: 11145 - 11846 (+)
Gene ID: Rep_295_c_279_10
Type: TC
Location: 11843 - 12841 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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