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Cluster: Rep_295_CGC21

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_295_c_194 Rep_295_c_194_1 132 779 - 2.A.95.1.3
pfam Rep_295_c_194 Rep_295_c_194_2 975 1790 - DUF3823
pfam Rep_295_c_194 Rep_295_c_194_3 1934 3994 - SusD_RagB | SusD-like_3
TC Rep_295_c_194 Rep_295_c_194_4 4014 7181 - 1.B.14.6.1
CAZyme Rep_295_c_194 Rep_295_c_194_5 7192 8664 - GH76
pfam Rep_295_c_194 Rep_295_c_194_6 8774 10600 - CarboxypepD_reg | CarboxypepD_reg | CarbopepD_reg_2 | CarbopepD_reg_2
NULL(UNKNOWN) Rep_295_c_194 Rep_295_c_194_7 10758 10997 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_295_c_194 Rep_295_c_194_8 11036 12862 - GH2
Gene ID: Rep_295_c_194_1
Type: TC
Location: 132 - 779 (-)
Gene ID: Rep_295_c_194_2
Type: pfam
Location: 975 - 1790 (-)
Gene ID: Rep_295_c_194_3
Type: pfam
Location: 1934 - 3994 (-)
Gene ID: Rep_295_c_194_4
Type: TC
Location: 4014 - 7181 (-)
Gene ID: Rep_295_c_194_5
Type: CAZyme
Location: 7192 - 8664 (-)
Gene ID: Rep_295_c_194_6
Type: pfam
Location: 8774 - 10600 (-)
Gene ID: Rep_295_c_194_7
Type:
Location: 10758 - 10997 (+)
Gene ID: Rep_295_c_194_8
Type: CAZyme
Location: 11036 - 12862 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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