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Cluster: Rep_295_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_295_c_170 Rep_295_c_170_4 2596 3777 - 2.A.1.7.17
CAZyme Rep_295_c_170 Rep_295_c_170_5 3857 5704 - GH32
TF Rep_295_c_170 Rep_295_c_170_6 6029 8782 + HTH_AraC
pfam Rep_295_c_170 Rep_295_c_170_7 8797 10407 + Peptidase_S41
TC Rep_295_c_170 Rep_295_c_170_8 10726 13848 + 1.B.14.6.1
pfam Rep_295_c_170 Rep_295_c_170_9 14043 15782 + SusD_RagB | SusD-like_3
pfam Rep_295_c_170 Rep_295_c_170_10 15804 17309 + DUF4960
CAZyme Rep_295_c_170 Rep_295_c_170_11 17315 18823 + GH32
CAZyme Rep_295_c_170 Rep_295_c_170_12 18948 20405 + CE20
pfam Rep_295_c_170 Rep_295_c_170_13 20605 21273 + UDG
pfam Rep_295_c_170 Rep_295_c_170_14 21267 22526 + T9SS_plug_1st
CAZyme Rep_295_c_170 Rep_295_c_170_15 22529 24562 - GH13_14
Gene ID: Rep_295_c_170_4
Type: TC
Location: 2596 - 3777 (-)
Gene ID: Rep_295_c_170_5
Type: CAZyme
Location: 3857 - 5704 (-)
Gene ID: Rep_295_c_170_6
Type: TF
Location: 6029 - 8782 (+)
Gene ID: Rep_295_c_170_7
Type: pfam
Location: 8797 - 10407 (+)
Gene ID: Rep_295_c_170_8
Type: TC
Location: 10726 - 13848 (+)
Gene ID: Rep_295_c_170_9
Type: pfam
Location: 14043 - 15782 (+)
Gene ID: Rep_295_c_170_10
Type: pfam
Location: 15804 - 17309 (+)
Gene ID: Rep_295_c_170_11
Type: CAZyme
Location: 17315 - 18823 (+)
Gene ID: Rep_295_c_170_12
Type: CAZyme
Location: 18948 - 20405 (+)
Gene ID: Rep_295_c_170_13
Type: pfam
Location: 20605 - 21273 (+)
Gene ID: Rep_295_c_170_14
Type: pfam
Location: 21267 - 22526 (+)
Gene ID: Rep_295_c_170_15
Type: CAZyme
Location: 22529 - 24562 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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