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Cluster: Rep_2957_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2957_c_33 Rep_2957_c_33_16 14713 16497 - 1.I.1.1.3
NULL(UNKNOWN) Rep_2957_c_33 Rep_2957_c_33_17 16598 17539 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_2957_c_33 Rep_2957_c_33_18 17582 19072 - GT28
TF Rep_2957_c_33 Rep_2957_c_33_19 19629 19922 + HTH_3
TC Rep_2957_c_33 Rep_2957_c_33_20 19926 20855 - 2.A.7.3.62
pfam Rep_2957_c_33 Rep_2957_c_33_21 20897 23860 + PDDEXK_1
pfam Rep_2957_c_33 Rep_2957_c_33_22 23864 27514 + UvrD-helicase | PDDEXK_1 | AAA_19 | UvrD_C
CAZyme Rep_2957_c_33 Rep_2957_c_33_23 27830 28822 - GT2
Gene ID: Rep_2957_c_33_16
Type: TC
Location: 14713 - 16497 (-)
Gene ID: Rep_2957_c_33_17
Type:
Location: 16598 - 17539 (-)
Gene ID: Rep_2957_c_33_18
Type: CAZyme
Location: 17582 - 19072 (-)
Gene ID: Rep_2957_c_33_19
Type: TF
Location: 19629 - 19922 (+)
Gene ID: Rep_2957_c_33_20
Type: TC
Location: 19926 - 20855 (-)
Gene ID: Rep_2957_c_33_21
Type: pfam
Location: 20897 - 23860 (+)
Gene ID: Rep_2957_c_33_22
Type: pfam
Location: 23864 - 27514 (+)
Gene ID: Rep_2957_c_33_23
Type: CAZyme
Location: 27830 - 28822 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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