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Cluster: Rep_2957_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2957_c_22 Rep_2957_c_22_13 12708 13523 + 9.B.18.1.2
pfam Rep_2957_c_22 Rep_2957_c_22_14 13533 14879 + NTP_transferase | MannoseP_isomer
pfam Rep_2957_c_22 Rep_2957_c_22_15 14910 16283 + UDPG_MGDP_dh | UDPG_MGDP_dh_C | UDPG_MGDP_dh_N
CAZyme Rep_2957_c_22 Rep_2957_c_22_16 16335 18164 + PL12_3
NULL(UNKNOWN) Rep_2957_c_22 Rep_2957_c_22_17 18470 19675 + NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) Rep_2957_c_22 Rep_2957_c_22_18 19831 19974 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_2957_c_22 Rep_2957_c_22_19 20002 20886 + GT4
Gene ID: Rep_2957_c_22_13
Type: TC
Location: 12708 - 13523 (+)
Gene ID: Rep_2957_c_22_14
Type: pfam
Location: 13533 - 14879 (+)
Gene ID: Rep_2957_c_22_15
Type: pfam
Location: 14910 - 16283 (+)
Gene ID: Rep_2957_c_22_16
Type: CAZyme
Location: 16335 - 18164 (+)
Gene ID: Rep_2957_c_22_17
Type:
Location: 18470 - 19675 (+)
Gene ID: Rep_2957_c_22_18
Type:
Location: 19831 - 19974 (-)
Gene ID: Rep_2957_c_22_19
Type: CAZyme
Location: 20002 - 20886 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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