Cluster: Rep_2954_CGC4
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_2954
- CGC Family ID: CGCFAM_00018
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2954_c_43 | Rep_2954_c_43_2 | 212 | 1267 | + | 9.B.18.2.1 |
| pfam | Rep_2954_c_43 | Rep_2954_c_43_3 | 1267 | 2127 | + | Epimerase | RmlD_sub_bind |
| pfam | Rep_2954_c_43 | Rep_2954_c_43_4 | 2132 | 3247 | + | Epimerase_2 |
| CAZyme | Rep_2954_c_43 | Rep_2954_c_43_5 | 3247 | 4368 | + | GT4 |
| CAZyme | Rep_2954_c_43 | Rep_2954_c_43_6 | 4494 | 5771 | + | GT4 |
Gene ID: Rep_2954_c_43_2
Type: TC
Location: 212 - 1267 (+)
Type: TC
Location: 212 - 1267 (+)
Gene ID: Rep_2954_c_43_3
Type: pfam
Location: 1267 - 2127 (+)
Type: pfam
Location: 1267 - 2127 (+)
Gene ID: Rep_2954_c_43_4
Type: pfam
Location: 2132 - 3247 (+)
Type: pfam
Location: 2132 - 3247 (+)
Gene ID: Rep_2954_c_43_5
Type: CAZyme
Location: 3247 - 4368 (+)
Type: CAZyme
Location: 3247 - 4368 (+)
Gene ID: Rep_2954_c_43_6
Type: CAZyme
Location: 4494 - 5771 (+)
Type: CAZyme
Location: 4494 - 5771 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Eggerthellaceae
Genus
Rubneribacter
Species
Rubneribacter badeniensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.