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Cluster: Rep_2954_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2954_c_25 Rep_2954_c_25_6 5883 6992 - GT2
TC Rep_2954_c_25 Rep_2954_c_25_7 7608 9251 + 2.A.15.1.11
pfam Rep_2954_c_25 Rep_2954_c_25_8 9248 10165 + Choline_kinase | APH
pfam Rep_2954_c_25 Rep_2954_c_25_9 10162 10926 + NTP_transferase | NTP_transf_3
TC Rep_2954_c_25 Rep_2954_c_25_10 10941 12791 - 3.A.1.103.5
TC Rep_2954_c_25 Rep_2954_c_25_11 12800 13588 - 3.A.1.103.6
pfam Rep_2954_c_25 Rep_2954_c_25_12 13784 14947 + LicD
CAZyme Rep_2954_c_25 Rep_2954_c_25_13 15092 16243 + GH25
Gene ID: Rep_2954_c_25_6
Type: CAZyme
Location: 5883 - 6992 (-)
Gene ID: Rep_2954_c_25_7
Type: TC
Location: 7608 - 9251 (+)
Gene ID: Rep_2954_c_25_8
Type: pfam
Location: 9248 - 10165 (+)
Gene ID: Rep_2954_c_25_9
Type: pfam
Location: 10162 - 10926 (+)
Gene ID: Rep_2954_c_25_10
Type: TC
Location: 10941 - 12791 (-)
Gene ID: Rep_2954_c_25_11
Type: TC
Location: 12800 - 13588 (-)
Gene ID: Rep_2954_c_25_12
Type: pfam
Location: 13784 - 14947 (+)
Gene ID: Rep_2954_c_25_13
Type: CAZyme
Location: 15092 - 16243 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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