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Cluster: Rep_293_CGC51

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_293_c_141 Rep_293_c_141_5 3442 4611 + GT4
CAZyme Rep_293_c_141 Rep_293_c_141_6 4589 5626 + GT2
TC Rep_293_c_141 Rep_293_c_141_7 5581 7077 - 2.A.66.2.16
pfam Rep_293_c_141 Rep_293_c_141_8 7016 8023 - 3Beta_HSD | Epimerase | RmlD_sub_bind | NAD_binding_4 | NAD_binding_10 | GDP_Man_Dehyd
CAZyme Rep_293_c_141 Rep_293_c_141_9 8020 9069 - GT4
pfam Rep_293_c_141 Rep_293_c_141_10 9244 10467 - EpsG
pfam Rep_293_c_141 Rep_293_c_141_11 10525 11256 - CpsB_CapC
TC Rep_293_c_141 Rep_293_c_141_12 11299 13707 - 8.A.3.3.3
pfam Rep_293_c_141 Rep_293_c_141_13 13723 14529 - Poly_export | SLBB_2
CAZyme Rep_293_c_141 Rep_293_c_141_14 14690 15427 + GT32
Gene ID: Rep_293_c_141_5
Type: CAZyme
Location: 3442 - 4611 (+)
Gene ID: Rep_293_c_141_6
Type: CAZyme
Location: 4589 - 5626 (+)
Gene ID: Rep_293_c_141_7
Type: TC
Location: 5581 - 7077 (-)
Gene ID: Rep_293_c_141_8
Type: pfam
Location: 7016 - 8023 (-)
Gene ID: Rep_293_c_141_9
Type: CAZyme
Location: 8020 - 9069 (-)
Gene ID: Rep_293_c_141_10
Type: pfam
Location: 9244 - 10467 (-)
Gene ID: Rep_293_c_141_11
Type: pfam
Location: 10525 - 11256 (-)
Gene ID: Rep_293_c_141_12
Type: TC
Location: 11299 - 13707 (-)
Gene ID: Rep_293_c_141_13
Type: pfam
Location: 13723 - 14529 (-)
Gene ID: Rep_293_c_141_14
Type: CAZyme
Location: 14690 - 15427 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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