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Cluster: Rep_293_CGC34

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_293_c_93 Rep_293_c_93_15 15581 18754 + 1.B.14.6.1
pfam Rep_293_c_93 Rep_293_c_93_16 18817 20562 + SusD_RagB | SusD-like_3
CAZyme Rep_293_c_93 Rep_293_c_93_17 20607 21575 + CBM32
CAZyme Rep_293_c_93 Rep_293_c_93_18 21631 23088 + GH29
CAZyme Rep_293_c_93 Rep_293_c_93_19 23095 26652 + GH2
NULL(UNKNOWN) Rep_293_c_93 Rep_293_c_93_20 26974 29517 + NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_293_c_93 Rep_293_c_93_21 29782 31602 + CarboxypepD_reg | CarboxypepD_reg
CAZyme Rep_293_c_93 Rep_293_c_93_22 31682 33136 + GH76
TC Rep_293_c_93 Rep_293_c_93_23 33153 36320 + 1.B.14.6.1
Gene ID: Rep_293_c_93_15
Type: TC
Location: 15581 - 18754 (+)
Gene ID: Rep_293_c_93_16
Type: pfam
Location: 18817 - 20562 (+)
Gene ID: Rep_293_c_93_17
Type: CAZyme
Location: 20607 - 21575 (+)
Gene ID: Rep_293_c_93_18
Type: CAZyme
Location: 21631 - 23088 (+)
Gene ID: Rep_293_c_93_19
Type: CAZyme
Location: 23095 - 26652 (+)
Gene ID: Rep_293_c_93_20
Type:
Location: 26974 - 29517 (+)
Gene ID: Rep_293_c_93_21
Type: pfam
Location: 29782 - 31602 (+)
Gene ID: Rep_293_c_93_22
Type: CAZyme
Location: 31682 - 33136 (+)
Gene ID: Rep_293_c_93_23
Type: TC
Location: 33153 - 36320 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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