Cluster: Rep_293_CGC27
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 10
- Substrate: xylan
- Genome ID: Rep_293
- CGC Family ID: CGCFAM_00238
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_293_c_80 | Rep_293_c_80_13 | 17985 | 19124 | + | CE1 |
| CAZyme | Rep_293_c_80 | Rep_293_c_80_14 | 19179 | 20789 | + | CBM91 | GH43_10 |
| CAZyme | Rep_293_c_80 | Rep_293_c_80_15 | 20786 | 22840 | + | CBM6 | GH43_29 |
| CAZyme | Rep_293_c_80 | Rep_293_c_80_16 | 22837 | 24291 | + | GH43_7 |
| CAZyme | Rep_293_c_80 | Rep_293_c_80_17 | 24321 | 26855 | + | GH43_2 | GH8 |
| NULL(UNKNOWN) | Rep_293_c_80 | Rep_293_c_80_18 | 26852 | 26959 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_293_c_80 | Rep_293_c_80_19 | 26910 | 29219 | + | GH3 |
| CAZyme | Rep_293_c_80 | Rep_293_c_80_20 | 29597 | 31318 | + | CBM91 | GH43_12 |
| CAZyme | Rep_293_c_80 | Rep_293_c_80_21 | 31633 | 32997 | + | CBM6 | GH43_29 |
| TC | Rep_293_c_80 | Rep_293_c_80_22 | 33338 | 36514 | + | 1.B.14.6.1 |
| pfam | Rep_293_c_80 | Rep_293_c_80_23 | 36533 | 38479 | + | SusD_RagB | SusD-like_3 |
| TC | Rep_293_c_80 | Rep_293_c_80_24 | 38505 | 41336 | + | 1.B.14.6.1 |
| pfam | Rep_293_c_80 | Rep_293_c_80_25 | 41347 | 43119 | + | SusD_RagB | SusD-like_3 |
| pfam | Rep_293_c_80 | Rep_293_c_80_26 | 43146 | 44195 | + | BT_3987-like_N | DUF5627 |
| CAZyme | Rep_293_c_80 | Rep_293_c_80_27 | 44222 | 46423 | + | GH10 |
| CAZyme | Rep_293_c_80 | Rep_293_c_80_28 | 46971 | 49496 | + | GH43_19 | GH43_34 |
Gene ID: Rep_293_c_80_13
Type: CAZyme
Location: 17985 - 19124 (+)
Type: CAZyme
Location: 17985 - 19124 (+)
Gene ID: Rep_293_c_80_14
Type: CAZyme
Location: 19179 - 20789 (+)
Type: CAZyme
Location: 19179 - 20789 (+)
Gene ID: Rep_293_c_80_15
Type: CAZyme
Location: 20786 - 22840 (+)
Type: CAZyme
Location: 20786 - 22840 (+)
Gene ID: Rep_293_c_80_16
Type: CAZyme
Location: 22837 - 24291 (+)
Type: CAZyme
Location: 22837 - 24291 (+)
Gene ID: Rep_293_c_80_17
Type: CAZyme
Location: 24321 - 26855 (+)
Type: CAZyme
Location: 24321 - 26855 (+)
Gene ID: Rep_293_c_80_18
Type:
Location: 26852 - 26959 (+)
Type:
Location: 26852 - 26959 (+)
Gene ID: Rep_293_c_80_19
Type: CAZyme
Location: 26910 - 29219 (+)
Type: CAZyme
Location: 26910 - 29219 (+)
Gene ID: Rep_293_c_80_20
Type: CAZyme
Location: 29597 - 31318 (+)
Type: CAZyme
Location: 29597 - 31318 (+)
Gene ID: Rep_293_c_80_21
Type: CAZyme
Location: 31633 - 32997 (+)
Type: CAZyme
Location: 31633 - 32997 (+)
Gene ID: Rep_293_c_80_22
Type: TC
Location: 33338 - 36514 (+)
Type: TC
Location: 33338 - 36514 (+)
Gene ID: Rep_293_c_80_23
Type: pfam
Location: 36533 - 38479 (+)
Type: pfam
Location: 36533 - 38479 (+)
Gene ID: Rep_293_c_80_24
Type: TC
Location: 38505 - 41336 (+)
Type: TC
Location: 38505 - 41336 (+)
Gene ID: Rep_293_c_80_25
Type: pfam
Location: 41347 - 43119 (+)
Type: pfam
Location: 41347 - 43119 (+)
Gene ID: Rep_293_c_80_26
Type: pfam
Location: 43146 - 44195 (+)
Type: pfam
Location: 43146 - 44195 (+)
Gene ID: Rep_293_c_80_27
Type: CAZyme
Location: 44222 - 46423 (+)
Type: CAZyme
Location: 44222 - 46423 (+)
Gene ID: Rep_293_c_80_28
Type: CAZyme
Location: 46971 - 49496 (+)
Type: CAZyme
Location: 46971 - 49496 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Muribaculaceae
Genus
Lepagella
Species
Lepagella sp910588245
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.