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Cluster: Rep_293_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_293_c_52 Rep_293_c_52_17 26614 28524 - GH43_4
pfam Rep_293_c_52 Rep_293_c_52_18 28540 30309 - SusD_RagB | SusD-like_3
TC Rep_293_c_52 Rep_293_c_52_19 30630 33863 - 1.B.14.6.1
pfam Rep_293_c_52 Rep_293_c_52_20 33899 35665 - SusD_RagB | SusD-like_3
TC Rep_293_c_52 Rep_293_c_52_21 35679 38804 - 1.B.14.6.1
NULL(UNKNOWN) Rep_293_c_52 Rep_293_c_52_22 38835 40685 - NULL(UNKNOWN)
[View Structural Homologs]
TF Rep_293_c_52 Rep_293_c_52_23 40985 45199 - HTH_AraC | HTH_AraC
CAZyme Rep_293_c_52 Rep_293_c_52_24 45455 46492 + GH43_5
Gene ID: Rep_293_c_52_17
Type: CAZyme
Location: 26614 - 28524 (-)
Gene ID: Rep_293_c_52_18
Type: pfam
Location: 28540 - 30309 (-)
Gene ID: Rep_293_c_52_19
Type: TC
Location: 30630 - 33863 (-)
Gene ID: Rep_293_c_52_20
Type: pfam
Location: 33899 - 35665 (-)
Gene ID: Rep_293_c_52_21
Type: TC
Location: 35679 - 38804 (-)
Gene ID: Rep_293_c_52_22
Type:
Location: 38835 - 40685 (-)
Gene ID: Rep_293_c_52_23
Type: TF
Location: 40985 - 45199 (-)
Gene ID: Rep_293_c_52_24
Type: CAZyme
Location: 45455 - 46492 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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