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Cluster: Rep_293_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_293_c_42 Rep_293_c_42_11 8986 11976 - GH2
pfam Rep_293_c_42 Rep_293_c_42_12 12011 12685 - Lipase_GDSL | Lipase_GDSL_2
CAZyme Rep_293_c_42 Rep_293_c_42_13 13070 15544 + GH2
pfam Rep_293_c_42 Rep_293_c_42_14 15582 15899 + rhaM
CAZyme Rep_293_c_42 Rep_293_c_42_15 16167 17468 + CE12
CAZyme Rep_293_c_42 Rep_293_c_42_16 17536 19164 + CE12 | CE12
TF Rep_293_c_42 Rep_293_c_42_17 19212 22106 + HTH_AraC
TC Rep_293_c_42 Rep_293_c_42_18 22434 25604 + 1.B.14.6.1
pfam Rep_293_c_42 Rep_293_c_42_19 25623 27758 + SusD_RagB | SusD-like_3
CAZyme Rep_293_c_42 Rep_293_c_42_20 27903 29735 + PL11_1
pfam Rep_293_c_42 Rep_293_c_42_21 29758 31239 + FGGY_N | FGGY_C
pfam Rep_293_c_42 Rep_293_c_42_22 31252 32505 + RhaA
TC Rep_293_c_42 Rep_293_c_42_23 32576 33610 + 2.A.7.6.1
pfam Rep_293_c_42 Rep_293_c_42_24 33698 34507 + Aldolase_II
CAZyme Rep_293_c_42 Rep_293_c_42_25 34514 35887 + GH105
pfam Rep_293_c_42 Rep_293_c_42_26 35887 36771 + DUF4861
TC Rep_293_c_42 Rep_293_c_42_27 36851 37102 - 1.E.43.1.10
Gene ID: Rep_293_c_42_11
Type: CAZyme
Location: 8986 - 11976 (-)
Gene ID: Rep_293_c_42_12
Type: pfam
Location: 12011 - 12685 (-)
Gene ID: Rep_293_c_42_13
Type: CAZyme
Location: 13070 - 15544 (+)
Gene ID: Rep_293_c_42_14
Type: pfam
Location: 15582 - 15899 (+)
Gene ID: Rep_293_c_42_15
Type: CAZyme
Location: 16167 - 17468 (+)
Gene ID: Rep_293_c_42_16
Type: CAZyme
Location: 17536 - 19164 (+)
Gene ID: Rep_293_c_42_17
Type: TF
Location: 19212 - 22106 (+)
Gene ID: Rep_293_c_42_18
Type: TC
Location: 22434 - 25604 (+)
Gene ID: Rep_293_c_42_19
Type: pfam
Location: 25623 - 27758 (+)
Gene ID: Rep_293_c_42_20
Type: CAZyme
Location: 27903 - 29735 (+)
Gene ID: Rep_293_c_42_21
Type: pfam
Location: 29758 - 31239 (+)
Gene ID: Rep_293_c_42_22
Type: pfam
Location: 31252 - 32505 (+)
Gene ID: Rep_293_c_42_23
Type: TC
Location: 32576 - 33610 (+)
Gene ID: Rep_293_c_42_24
Type: pfam
Location: 33698 - 34507 (+)
Gene ID: Rep_293_c_42_25
Type: CAZyme
Location: 34514 - 35887 (+)
Gene ID: Rep_293_c_42_26
Type: pfam
Location: 35887 - 36771 (+)
Gene ID: Rep_293_c_42_27
Type: TC
Location: 36851 - 37102 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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