Cluster: Rep_293_CGC11
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_293
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_293_c_22 | Rep_293_c_22_2 | 2174 | 4774 | + | 1.C.105.2.12 |
| pfam | Rep_293_c_22 | Rep_293_c_22_3 | 4785 | 5639 | + | Porph_ging |
| NULL(UNKNOWN) | Rep_293_c_22 | Rep_293_c_22_4 | 5636 | 6643 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_293_c_22 | Rep_293_c_22_5 | 6989 | 8989 | + | GH43_29 | GH43_34 |
| pfam | Rep_293_c_22 | Rep_293_c_22_6 | 9313 | 11289 | + | TonB_dep_Rec_b-barrel | Plug |
| pfam | Rep_293_c_22 | Rep_293_c_22_7 | 11457 | 12533 | + | DUF5074 |
| TC | Rep_293_c_22 | Rep_293_c_22_8 | 12539 | 13657 | + | 3.A.1.13.2 |
| TC | Rep_293_c_22 | Rep_293_c_22_9 | 13654 | 14646 | + | 3.A.1.13.2 |
| TC | Rep_293_c_22 | Rep_293_c_22_10 | 14673 | 16085 | - | 3.A.1.18.1 |
| NULL(UNKNOWN) | Rep_293_c_22 | Rep_293_c_22_11 | 16230 | 17087 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_293_c_22 | Rep_293_c_22_12 | 17162 | 17710 | - | GH24 |
| STP | Rep_293_c_22 | Rep_293_c_22_13 | 17833 | 18336 | + | SKI |
| CAZyme | Rep_293_c_22 | Rep_293_c_22_14 | 18521 | 20578 | + | GH154 |
Gene ID: Rep_293_c_22_2
Type: TC
Location: 2174 - 4774 (+)
Type: TC
Location: 2174 - 4774 (+)
Gene ID: Rep_293_c_22_3
Type: pfam
Location: 4785 - 5639 (+)
Type: pfam
Location: 4785 - 5639 (+)
Gene ID: Rep_293_c_22_4
Type:
Location: 5636 - 6643 (+)
Type:
Location: 5636 - 6643 (+)
Gene ID: Rep_293_c_22_5
Type: CAZyme
Location: 6989 - 8989 (+)
Type: CAZyme
Location: 6989 - 8989 (+)
Gene ID: Rep_293_c_22_6
Type: pfam
Location: 9313 - 11289 (+)
Type: pfam
Location: 9313 - 11289 (+)
Gene ID: Rep_293_c_22_7
Type: pfam
Location: 11457 - 12533 (+)
Type: pfam
Location: 11457 - 12533 (+)
Gene ID: Rep_293_c_22_8
Type: TC
Location: 12539 - 13657 (+)
Type: TC
Location: 12539 - 13657 (+)
Gene ID: Rep_293_c_22_9
Type: TC
Location: 13654 - 14646 (+)
Type: TC
Location: 13654 - 14646 (+)
Gene ID: Rep_293_c_22_10
Type: TC
Location: 14673 - 16085 (-)
Type: TC
Location: 14673 - 16085 (-)
Gene ID: Rep_293_c_22_11
Type:
Location: 16230 - 17087 (-)
Type:
Location: 16230 - 17087 (-)
Gene ID: Rep_293_c_22_12
Type: CAZyme
Location: 17162 - 17710 (-)
Type: CAZyme
Location: 17162 - 17710 (-)
Gene ID: Rep_293_c_22_13
Type: STP
Location: 17833 - 18336 (+)
Type: STP
Location: 17833 - 18336 (+)
Gene ID: Rep_293_c_22_14
Type: CAZyme
Location: 18521 - 20578 (+)
Type: CAZyme
Location: 18521 - 20578 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Muribaculaceae
Genus
Lepagella
Species
Lepagella sp910588245
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.