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Cluster: Rep_293_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_293_c_5 Rep_293_c_5_14 12778 13539 + 2.A.115.2.8
CAZyme Rep_293_c_5 Rep_293_c_5_15 13567 14247 + GT51
STP Rep_293_c_5 Rep_293_c_5_16 14279 15430 - ATPase_2
TF Rep_293_c_5 Rep_293_c_5_17 15754 19887 - HTH_AraC
TC Rep_293_c_5 Rep_293_c_5_18 20183 23503 + 1.B.14.6.1
pfam Rep_293_c_5 Rep_293_c_5_19 23545 25545 + SusD_RagB | SusD-like_3
NULL(UNKNOWN) Rep_293_c_5 Rep_293_c_5_20 25554 25688 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_293_c_5 Rep_293_c_5_21 25829 28345 + GH43_24
CAZyme Rep_293_c_5 Rep_293_c_5_22 28345 29949 + GH43_9
CAZyme Rep_293_c_5 Rep_293_c_5_23 30008 32002 + PL27
CAZyme Rep_293_c_5 Rep_293_c_5_24 32003 32848 + CE12
Gene ID: Rep_293_c_5_14
Type: TC
Location: 12778 - 13539 (+)
Gene ID: Rep_293_c_5_15
Type: CAZyme
Location: 13567 - 14247 (+)
Gene ID: Rep_293_c_5_16
Type: STP
Location: 14279 - 15430 (-)
Gene ID: Rep_293_c_5_17
Type: TF
Location: 15754 - 19887 (-)
Gene ID: Rep_293_c_5_18
Type: TC
Location: 20183 - 23503 (+)
Gene ID: Rep_293_c_5_19
Type: pfam
Location: 23545 - 25545 (+)
Gene ID: Rep_293_c_5_20
Type:
Location: 25554 - 25688 (-)
Gene ID: Rep_293_c_5_21
Type: CAZyme
Location: 25829 - 28345 (+)
Gene ID: Rep_293_c_5_22
Type: CAZyme
Location: 28345 - 29949 (+)
Gene ID: Rep_293_c_5_23
Type: CAZyme
Location: 30008 - 32002 (+)
Gene ID: Rep_293_c_5_24
Type: CAZyme
Location: 32003 - 32848 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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