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Cluster: Rep_2939_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2939_c_4 Rep_2939_c_4_21 25402 26442 - GT2
TC Rep_2939_c_4 Rep_2939_c_4_22 26455 28302 - 9.B.18.2.1
CAZyme Rep_2939_c_4 Rep_2939_c_4_23 28338 29273 - GT81
pfam Rep_2939_c_4 Rep_2939_c_4_24 29396 31543 - DUF6541
CAZyme Rep_2939_c_4 Rep_2939_c_4_25 31658 32341 + GT2
pfam Rep_2939_c_4 Rep_2939_c_4_26 32345 32701 + DUF2304
CAZyme Rep_2939_c_4 Rep_2939_c_4_27 32698 33852 - GT4
pfam Rep_2939_c_4 Rep_2939_c_4_28 33842 34702 - LicD
CAZyme Rep_2939_c_4 Rep_2939_c_4_29 34881 35759 + GT2
Gene ID: Rep_2939_c_4_21
Type: CAZyme
Location: 25402 - 26442 (-)
Gene ID: Rep_2939_c_4_22
Type: TC
Location: 26455 - 28302 (-)
Gene ID: Rep_2939_c_4_23
Type: CAZyme
Location: 28338 - 29273 (-)
Gene ID: Rep_2939_c_4_24
Type: pfam
Location: 29396 - 31543 (-)
Gene ID: Rep_2939_c_4_25
Type: CAZyme
Location: 31658 - 32341 (+)
Gene ID: Rep_2939_c_4_26
Type: pfam
Location: 32345 - 32701 (+)
Gene ID: Rep_2939_c_4_27
Type: CAZyme
Location: 32698 - 33852 (-)
Gene ID: Rep_2939_c_4_28
Type: pfam
Location: 33842 - 34702 (-)
Gene ID: Rep_2939_c_4_29
Type: CAZyme
Location: 34881 - 35759 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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