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Cluster: Rep_2939_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2939_c_2 Rep_2939_c_2_55 63842 64501 + 8.A.3.2.3
TC Rep_2939_c_2 Rep_2939_c_2_56 64504 65349 + 8.A.3.2.1
pfam Rep_2939_c_2 Rep_2939_c_2_57 65352 66002 + CpsB_CapC
TC Rep_2939_c_2 Rep_2939_c_2_58 66119 66655 + 9.B.18.1.3
pfam Rep_2939_c_2 Rep_2939_c_2_59 66717 66974 + Bac_transf
CAZyme Rep_2939_c_2 Rep_2939_c_2_60 66971 68092 + GT4
pfam Rep_2939_c_2 Rep_2939_c_2_61 68098 68670 + Hexapep | Hexapep_2
CAZyme Rep_2939_c_2 Rep_2939_c_2_62 68671 69804 + GT4
CAZyme Rep_2939_c_2 Rep_2939_c_2_63 69801 70892 + GT4
Gene ID: Rep_2939_c_2_55
Type: TC
Location: 63842 - 64501 (+)
Gene ID: Rep_2939_c_2_56
Type: TC
Location: 64504 - 65349 (+)
Gene ID: Rep_2939_c_2_57
Type: pfam
Location: 65352 - 66002 (+)
Gene ID: Rep_2939_c_2_58
Type: TC
Location: 66119 - 66655 (+)
Gene ID: Rep_2939_c_2_59
Type: pfam
Location: 66717 - 66974 (+)
Gene ID: Rep_2939_c_2_60
Type: CAZyme
Location: 66971 - 68092 (+)
Gene ID: Rep_2939_c_2_61
Type: pfam
Location: 68098 - 68670 (+)
Gene ID: Rep_2939_c_2_62
Type: CAZyme
Location: 68671 - 69804 (+)
Gene ID: Rep_2939_c_2_63
Type: CAZyme
Location: 69801 - 70892 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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