Cluster: Rep_2939_CGC12
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2939
- CGC Family ID: CGCFAM_05375
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2939_c_19 | Rep_2939_c_19_22 | 24585 | 25361 | - | 3.A.1.1.5 |
| STP | Rep_2939_c_19 | Rep_2939_c_19_23 | 25503 | 26513 | - | SBP_bac_3 |
| NULL(UNKNOWN) | Rep_2939_c_19 | Rep_2939_c_19_24 | 27036 | 27722 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_2939_c_19 | Rep_2939_c_19_25 | 27923 | 29230 | + | GT2 |
Gene ID: Rep_2939_c_19_22
Type: TC
Location: 24585 - 25361 (-)
Type: TC
Location: 24585 - 25361 (-)
Gene ID: Rep_2939_c_19_23
Type: STP
Location: 25503 - 26513 (-)
Type: STP
Location: 25503 - 26513 (-)
Gene ID: Rep_2939_c_19_24
Type:
Location: 27036 - 27722 (+)
Type:
Location: 27036 - 27722 (+)
Gene ID: Rep_2939_c_19_25
Type: CAZyme
Location: 27923 - 29230 (+)
Type: CAZyme
Location: 27923 - 29230 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Eggerthellaceae
Genus
Slackia
Species
Slackia piriformis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_2939_c_19_22 | omnivore > vegan | 1.13795 | 0.04515 |
| Rep_2939_c_19_22 | vegetarian > vegan | 1.01162 | 0.02258 |