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Cluster: Rep_2927_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2927_c_7 Rep_2927_c_7_18 17922 19718 - GH20
pfam Rep_2927_c_7 Rep_2927_c_7_19 19928 24397 - RNA_pol_Rpb1_2 | RNA_pol_Rpb1_2 | RNA_pol_A_CTD | RNA_pol_Rpb1_3 | RNA_pol_Rpb1_1 | RNA_pol_Rpb1_5 | RNA_pol_Rpb1_4
pfam Rep_2927_c_7 Rep_2927_c_7_20 24404 27901 - RNA_pol_Rpb2_6 | RNA_pol_Rpb2_7 | RNA_pol_Rpb2_2 | RNA_pol_Rpb2_1 | RNA_pol_Rpb2_3 | RNA_pol_Rpb2_45
TC Rep_2927_c_7 Rep_2927_c_7_21 28433 29539 - 3.A.1.5.34
TC Rep_2927_c_7 Rep_2927_c_7_22 29540 30643 - 3.A.1.5.20
TC Rep_2927_c_7 Rep_2927_c_7_23 30650 31684 - 3.A.1.5.38
TC Rep_2927_c_7 Rep_2927_c_7_24 31692 32708 - 3.A.1.5.39
TC Rep_2927_c_7 Rep_2927_c_7_25 32829 34442 - 3.A.1.5.27
pfam Rep_2927_c_7 Rep_2927_c_7_26 34960 35688 + Peptidase_C70 | Peptidase_C39_2
pfam Rep_2927_c_7 Rep_2927_c_7_27 35838 37904 - GTP_EFTU | EFG_C | GTP_EFTU_D2 | EFG_IV | EFG_III | EF-G_D2
TC Rep_2927_c_7 Rep_2927_c_7_28 38312 39073 - 3.A.1.3.14
TC Rep_2927_c_7 Rep_2927_c_7_29 39207 39860 - 3.A.1.3.14
TC Rep_2927_c_7 Rep_2927_c_7_30 40151 41158 - 3.A.1.3.10
Gene ID: Rep_2927_c_7_18
Type: CAZyme
Location: 17922 - 19718 (-)
Gene ID: Rep_2927_c_7_19
Type: pfam
Location: 19928 - 24397 (-)
Gene ID: Rep_2927_c_7_20
Type: pfam
Location: 24404 - 27901 (-)
Gene ID: Rep_2927_c_7_21
Type: TC
Location: 28433 - 29539 (-)
Gene ID: Rep_2927_c_7_22
Type: TC
Location: 29540 - 30643 (-)
Gene ID: Rep_2927_c_7_23
Type: TC
Location: 30650 - 31684 (-)
Gene ID: Rep_2927_c_7_24
Type: TC
Location: 31692 - 32708 (-)
Gene ID: Rep_2927_c_7_25
Type: TC
Location: 32829 - 34442 (-)
Gene ID: Rep_2927_c_7_26
Type: pfam
Location: 34960 - 35688 (+)
Gene ID: Rep_2927_c_7_27
Type: pfam
Location: 35838 - 37904 (-)
Gene ID: Rep_2927_c_7_28
Type: TC
Location: 38312 - 39073 (-)
Gene ID: Rep_2927_c_7_29
Type: TC
Location: 39207 - 39860 (-)
Gene ID: Rep_2927_c_7_30
Type: TC
Location: 40151 - 41158 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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