Cluster: Rep_2927_CGC4
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate: host glycan/beta-glucan
- Genome ID: Rep_2927
- CGC Family ID: CGCFAM_00012
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2927_c_5 | Rep_2927_c_5_18 | 20410 | 20733 | + | 4.A.3.2.2 |
| TC | Rep_2927_c_5 | Rep_2927_c_5_19 | 20859 | 21158 | + | 4.A.3.2.4 |
| NULL(UNKNOWN) | Rep_2927_c_5 | Rep_2927_c_5_20 | 21363 | 21782 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_2927_c_5 | Rep_2927_c_5_21 | 21812 | 23146 | + | 4.A.3.2.3 |
| CAZyme | Rep_2927_c_5 | Rep_2927_c_5_22 | 23267 | 24697 | + | GH1 |
Gene ID: Rep_2927_c_5_18
Type: TC
Location: 20410 - 20733 (+)
Type: TC
Location: 20410 - 20733 (+)
Gene ID: Rep_2927_c_5_19
Type: TC
Location: 20859 - 21158 (+)
Type: TC
Location: 20859 - 21158 (+)
Gene ID: Rep_2927_c_5_20
Type:
Location: 21363 - 21782 (+)
Type:
Location: 21363 - 21782 (+)
Gene ID: Rep_2927_c_5_21
Type: TC
Location: 21812 - 23146 (+)
Type: TC
Location: 21812 - 23146 (+)
Gene ID: Rep_2927_c_5_22
Type: CAZyme
Location: 23267 - 24697 (+)
Type: CAZyme
Location: 23267 - 24697 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp902470925
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.